MétaCan
Menu
← Back to cohort
Record W4306147538 · doi:10.1101/2022.10.13.512100

Concurrent temporal patterning of neural stem cells in the fly visual system

2022· preprint· en· W4306147538 on OpenAlexafffund
Urfa Arain, Ishrat Maliha Islam, Priscilla Valentino, Ted Erclik

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2022
Typepreprint
Languageen
FieldNeuroscience
TopicNeurobiology and Insect Physiology Research
Canadian institutionsCollege of Family Physicians of CanadaUniversity of Toronto
FundersNatural Sciences and Engineering Research Council of CanadaUniversity of TorontoPfizer
KeywordsNeuroepithelial cellBiologyNeuroblastMedullaNeuroscienceNeural stem cellAnatomyCell biologyStem cellNeurogenesis

Abstract

fetched live from OpenAlex

Abstract The temporal and spatial patterning of neural stem cells is a powerful mechanism by which to generate neural diversity in both vertebrate and invertebrate brains. In the Drosophila optic lobe, the neuroblasts (NBs) that generate the ∼120 neuronal cell types of the medulla are patterned by independent temporal and spatial inputs. In the temporal axis, a cascade of twelve transcription factors (TFs) are expressed in medulla NBs as they age. In the spatial axis, the neuroepithelium from which these NBs are generated is sub-divided into eight compartments by the expression of five additional TFs. Distinct neuronal types are generated by NBs based on their spatio-temporal address. Here, we describe a third major patterning axis that further diversifies neuronal fates in the medulla. We show that the symmetrically dividing neuroepithelial cells from which the medulla NBs are generated are temporally patterned by opposing gradients of the Imp and Syp RNA-binding proteins. Imp and Syp regulate the expression of a set of TFs in the neuroepithelium to confer NBs from the same spatio-temporal address with unique identities based on the developmental stage they are generated. We show that Imp and Syp differentially pattern NBs in the Vsx1-Hth spatio-temporal birth window to generate seven distinct neuronal cell types (Li2, TmY17, TmY15, Tm23, Pm3a, Pm3b and TmY12) in successive developmental windows. We further demonstrate that the birthdate of these neurons correlates with their final position in the adult cortex, resulting in unanticipated specializations of the retinotopic circuit in the anterior-posterior axis of the visual system. The concurrent temporal patterning of symmetrically and asymmetrically dividing neural stem cells thus acts as a powerful mechanism to couple the generation of neural diversity with circuit patterning.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.276
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2022
Admission routes2
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicNeurobiology and Insect Physiology Research→French-language works237,207→