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Record W4306249203 · doi:10.1101/2022.10.11.509802

A meta-analysis of genome-wide association studies identifies new genetic loci associated with all-cause and vascular dementia

2022· preprint· en· W4306249203 on OpenAlexaff
Bernard Fongang, Muralidharan Sargurupremraj, Xueqiu Jian, Aniket Mishra, Vincent Damotte, Fan Kang-Hsien, Gloria Li, Jingyun Yang, Saima Hilal, Maria J. Knol, Maria Pina Concas, Girotto Giorgia, Moeen Riaz, Alexander Guðjónsson, Paul Lacaze, Adam C. Naj, Sven J. van der Lee, Monica Goss, Yannick W. Ngouongo, Olivia Anna Skrobot, Vilmundur Guðnason, Lenore J. Launer, Oscar L. López, Mary N. Haan, Ingunn Bosnes, Carole Dufouil, Mary Ganguli, Ching‐Lung Cheung, David A. Bennett, Christopher Chen, Kamboh M. Ilyas, Claudia L. Satizábal, Arfan M. Ikram, Stéphanie Debette, Myriam Fornage, Qiong Yang, Gerard D. Schellenberg, Bendik S. Winsvold, Patrick G. Kehoe, Agustı́n Ruiz, Jean‐Charles Lambert, Galit Weinstein, Sudha Seshadri

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2022
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsInstitute of Aging
Fundersnot available
KeywordsGenome-wide association studyDementiaVascular dementiaGenetic associationDiseaseGenetic architectureBiologyGeneticsDiabetes mellitusBioinformaticsMedicineSingle-nucleotide polymorphismGeneQuantitative trait locusInternal medicineGenotypeEndocrinology

Abstract

fetched live from OpenAlex

ABSTRACT Dementia is multifactorial with Alzheimer (AD) and vascular (VaD) pathologies making the largest contributions. Genome-wide association studies (GWAS) have identified over 70 genetic risk loci for AD but the genomic determinants of other dementias, including VaD remain understudied. We hypothesize that common forms of dementia will share genetic risk factors and conducted the largest GWAS to date of “all-cause dementia” (ACD) and examined the genetic overlap with VaD. Our dataset includes 809,299 individuals from European, African, Asian, and Hispanic ancestries with 46,902 and 8,702 cases of ACD and VaD, respectively. We replicated known AD loci at genome-wide significance for both ACD and VaD and conducted bioinformatic analyses to prioritize genes that are likely functionally relevant, and shared with closely related traits and risk factors. For ACD, novel loci identified were associated with energy transport ( SEMA4D ), neuronal excitability ( ANO3 ), amyloid deposition in the brain ( RBFOX1 ), and MRI markers of small vessel disease ( HBEGF ). Novel VaD loci were associated with hypertension, diabetes, and neuron maintenance ( SPRY2, FOXA2, AJAP1 , and PSMA3 ). Our study identified genetic risks underlying all-cause dementia, demonstrating overlap with neurodegenerative processes, vascular risk factors (Type-II diabetes, blood pressure, lipid) and cerebral small vessel disease. These novel insights could lead to new prevention and treatment strategies for all dementias.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.015
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: Meta-analysis
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.045

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.015
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0050.026
Bibliometrics0.0050.007
Science and technology studies0.0010.000
Scholarly communication0.0030.001
Open science0.0020.002
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.046
GPT teacher head0.266
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2022
Admission routes1
Has abstractyes

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