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Record W4306359299 · doi:10.56588/iabcd.v1i2.66

IN SILICO SCREENING OF MAJOR CANCER DRUG TARGETS (GROWTH FACTOR RECEPTORS) FOR NATURE DERIVED PHYTOCHEMICALS

2022· article· en· W4306359299 on OpenAlexaff
Tithi Trivedi, Siva Kumar, Archana Mankad, Saumya Patel, Rakesh Rawal, Himanshu Pandya

Bibliographic record

VenueInternational Association of Biologicals and Computational Digest · 2022
Typearticle
Languageen
FieldMedicine
TopicCancer Treatment and Pharmacology
Canadian institutionsImpact
Fundersnot available
KeywordsDrug targetIn silicoReceptorBiologyChemistryPharmacologyBiochemistryGene

Abstract

fetched live from OpenAlex

Cancer i s a group of abn ormal cells. The unregulated gro wth factor recepto r t yrosin e kinase ( GFR- TK) proteins are implicated in the proliferation o f mo re than 60 % o f all can cer t ypes. Screenin g o f ph ytoch emicals for their anti - angiogenic potential has b een a gro wing area o f research in the mod ern d ecad e. There i s a well - kno wn principle that natural co mpounds are active against several diseases, includin g variou s t yp es of can cer. Th e present research work fo cuses on kno wn gro wth factor receptors ( GFRs) as an important target fo r co mputation al s tudies. In this stud y, 96 curated anti - can cer co mpounds were virtu ally screened against the EGFR, FGFR, IGFR, and HGFR usin g molecular dockin g so ftware. For each GFR, we h ave considered ten top most results as potential hits. Among them, co mmon f i ve results are: Spiro solan e, Ginkgetin, Fangchinoline, Theaflavin and Ursolic acid. These co mpounds have b een reported to show antican cer activities in the l i t erature. With the help of different interaction analysis tools, the protein - l i gand inter action patterns between th e functional groups o f these co mpounds were analyzed. Hydro gen bonding and h ydrophobic forces are th e main co mponents o f th e interactions o f th ese hits, similar to those exp erimental fo r th e kno wn inhibitors. Fro m the maximu m nu mb ers o f hits, i t could be indicated that co mpounds Spirosolan e, Ginkgetin, Fan gchinoline, Th eaflavin and Ursolic acid are pro miscuous l ead s in the drug disco very process.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.020

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.324
Teacher spread0.311 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2022
Admission routes1
Has abstractyes

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Same venueInternational Association of Biologicals and Computational DigestSame topicCancer Treatment and PharmacologyFrench-language works237,207