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Record W4311517699 · doi:10.1002/imt2.66

Deciphering factors driving soil microbial life‐history strategies in restored grasslands

2022· article· en· W4311517699 on OpenAlexaff
Yanxing Dou, Baorong Wang, Zhijing Xue, Yunqiang Wang, Shaoshan An, Scott X. Chang

Bibliographic record

VenueiMeta · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Phylogenetic Studies
Canadian institutionsUniversity of Alberta
FundersNatural Science Foundation of Shaanxi ProvinceState Key Laboratory of Loess and Quaternary GeologyChinese Academy of Sciences
KeywordsAcidobacteriaBiologyChronosequencePlanctomycetesProteobacteriaActinobacteriaMicrobial population biologyBacteroidetesGrasslandEcologyMicrobial ecologyBotanyEcosystemBacteria16S ribosomal RNA

Abstract

fetched live from OpenAlex

Abstract In macroecology, the concept of r‐ and K‐strategy has been widely applied, yet, there have been limited studies on microbial life‐history strategies in temperate grasslands using multiple sequencing approaches. Total phospholipid fatty acid (PLFA) analysis, high‐throughput meta‐genomic sequencing, and GeoChip technologies were used to examine the changes in microbial life‐history traits in a chronosequence of restored grasslands (1, 5, 10, 15, 25, and 30 years since restoration). Grassland restoration increased the relative abundances of Actinobacteria, Proteobacteria, and Bacteroidetes but reduced the relative abundances of Acidobacteria, Planctomycetes, and Chloroflexi. PLFA analysis revealed that grassland restoration reduced the fungi:bacteria and Gram‐positive:Gram‐negative bacteria ratios. Combined with the meta‐genomic data, we found that grassland restoration shifted microorganisms from oligotrophic (K‐) to copiotrophic (r‐) groups, consistent with the increased rRNA operon copy number of the microbial community. Structural equation modeling showed that soil properties positively ( p < 0.05) while plant properties negatively ( p < 0.05) affected microbial life‐history traits. We built a framework to highlight the importance of plant and soil properties in driving microbial life‐history traits during grassland restoration. Finally, by incorporating meta‐genomic and other microbiological data, this study showed that microbial life‐history traits support the idea that rRNA operon copy number is a trait that reflects resource availability to soil microorganisms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.879
Threshold uncertainty score0.573

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.221
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations294
Published2022
Admission routes1
Has abstractyes

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