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Record W4311732316 · doi:10.1093/ofid/ofac492.567

511. The cefazolin (CZ) and piperacillin-tazobactam (TZP) inoculum effects (IEs) are persistent amongst serial isolates of methicillin-sensitive <i>Staphylococcus aureus</i> (MSSA) derived from the sputum of persons with cystic fibrosis (pwCF) despite variation in other phenotypes.

2022· article· en· W4311732316 on OpenAlexaff
Julianna Svishchuk, Barbara J. Waddell, Sicheng Lee, Harvey Rabin, Luiz F. Lisboa, Daniel B. Gregson, Michael G. Surette, Michael D. Parkins

Bibliographic record

VenueOpen Forum Infectious Diseases · 2022
Typearticle
Languageen
FieldMedicine
TopicAntimicrobial Resistance in Staphylococcus
Canadian institutionsMcMaster UniversityUniversity of Calgary
Fundersnot available
KeywordsMedicineSputumMicrobiologyMethicillin-resistant Staphylococcus aureusStaphylococcus aureusPiperacillinPiperacillin/tazobactamInternal medicinePseudomonas aeruginosaBiologyBacteriaPathologyTuberculosis

Abstract

fetched live from OpenAlex

Abstract Background Phenotypic diversity among chronically infecting pathogens within the airways of pwCF is increasingly recognized, limiting susceptibility testing-directed decision-making (Somayaji, 2019, JCF). While it is an important outcome determinant in infection (Miller, 2018, OFID), the IE has generally only been studied in acute infection models. Herein, we sought to establish if variation in the presence of the IE to beta-lactams exists among CF-derived MSSA. Methods Single sputum cultures from 10 pwCF with chronic MSSA infection of ≥ 10 years in duration were collected, and 10 unique colonies from each were selected and confirmed as MSSA for a total of 100 isolates. Individual isolates were subjected to susceptibility testing at standard (SI: 105 CFU/mL) and high inoculum (HI: 107 CFU/mL) against CZ and TZP and assessed for protease (PRO) and hyaluronidase (HA) production in triplicate. The presence of the IE was defined if a ≥ 4-fold difference in MIC between SI and HI existed. All 100 strains were typed using pulsed-field gel electrophoresis. Results Patients included had a median age of 30.5 years, forced vital capacity of 93%, forced expiratory volume in one second of 66% predicted, and a BMI of 21.5 kg/m2. Median sputum MSSA burden was 106 CFU/ml. The IE was overall more common with TZP than CZ: 47% vs 33%, respectively. Median MIC50 for CZ increased between SI and HI: 0.5 to 1µg/mL, and TZP: 2 to 4µg/mL (p< 0.0001 for both). The most prevalent pulsotypes identified corresponded to multilocus sequence types (ST)-5 (20%), ST-30 (15%), and ST-1 (5%), where ST-30 isolates were more likely to exhibit the CZ and TZP IE (p< 0.0001 for both). Eight out of 10 patients had all isolates belonging to the same pulsogroup. Of patients infected with a single strain, discordance between IE phenotype was not noted, though PRO and HA production varied. Among these patients, the standard deviation of zone clearance diameter ranged from 0-0.9cm (mean range: 0-1.4cm) and 0-1.8cm (mean range: 0-7.2cm), respectively, between individual isolates. Conclusion Phenotypic diversity in chronic MSSA exists within the airways of pwCF. However, we observed the IE for CZ and TZP to be strain dependent, without variable penetrance. Disclosures All Authors: No reported disclosures.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.229
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2022
Admission routes1
Has abstractyes

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