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Results of detection of poly-virulent bacterial strains Lactobacillus spp. during associative interaction with protozoa Blastocystis ho-minis in vivo

2022· article· en· W4312949834 on OpenAlexaff
Yulia Yu. Krasnoperova, Sevinj Sh. Mehmanova, Ekaterina A. Khusnutdinova

Bibliographic record

VenueВестник Пермского университета Серия «Биология»=Bulletin of Perm University Biology · 2022
Typearticle
Languageen
FieldImmunology and Microbiology
TopicParasitic Infections and Diagnostics
Canadian institutionsArtificial Intelligence in Medicine (Canada)
Fundersnot available
KeywordsVirulenceMicrobiologyBiologyBlastocystisLactobacillusFimbriaProtozoaBacterial adhesinPopulationLactobacillus reuteriLactobacillus caseiBacteriaFecesGeneGenetics

Abstract

fetched live from OpenAlex

The identification of polyvirulent strains of Lactobacillus spp. bacteria with associative interaction with protozoa Blastocystis hominis in vivo was carried out. Lactobacillus spp. and B. hominis strains were obtained from the feces of 396 patients undergoing examination for intestinal dysbiosis. Identification was carried out using microscopic, bacteriological and parasitological methods. 112 reference strains of lactobacilli NK1 and K3SH24 deposited at the Institute of Genetics and Breeding of Industrial Microorganisms were used as control. The degree of virulence of the simplest blastocysts was determined by intraperitoneal administration to white mice (weighing 17.4+1.5 g) 0.5 ml of a culture suspension of the studied microorganisms grown on Suresh medium. Primers to several genes determining the ability to form type 1 fimbriae, type S and P fimbriae, bacterial adhesin intimin and hemolysin were used in the investigation. Testing of 396 Lactobacillus spp. strains isolated from microsymbiocenoses with Blastocystis hominis of varying degrees of virulence showed that the dynamics of detection of pathogenicity genes in lactobacilli increased with an increase in the degree of virulence of protozoa. Most often, in the general pool of lactobacillus strains, the desired amplicons were detected using primers to the fimA gene (up to 67.9%). During associative interaction with moderately and highly virulent blastocysts, an increase in the heterogeneity of the lactobacillus population was revealed, manifested by an increase in the frequency of detection of all studied genetic determinants of pathogenicity, compared with Lactobacillus spp. strains isolated from associations with avirulent B. hominis and in the control group.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.208
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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