MétaCan
Menu
Back to cohort
Record W4312999205 · doi:10.1161/atvb.42.suppl_1.530

Abstract 530: Identification Of The Specific Residue In Apolipoprotein(a) Responsible For Mediating Covalent Attachment Of Oxidized Phospholipids

2022· article· en· W4312999205 on OpenAlexaff
Justin R. Clark, Amer Youssef, Matthew J. Borrelli, Michael B. Boffa, Marlys L. Koschinsky

Bibliographic record

VenueArteriosclerosis Thrombosis and Vascular Biology · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer, Lipids, and Metabolism
Canadian institutionsRobarts Clinical TrialsWestern University
Fundersnot available
KeywordsApolipoprotein BChemistryBiochemistryAsparagineLysineMutantResidue (chemistry)Binding siteMutagenesisMolecular biologyBiologyAmino acidGene

Abstract

fetched live from OpenAlex

Oxidized phospholipids (oxPL) are highly inflammatory molecules that are linked to atherogenesis. Previously, Lp(a) was identified as the major carrier of oxPL in human plasma, with the majority of the oxPL being covalently associated to its apolipoprotein(a) (apo(a)) component. Earlier work by our group identified the Kringle (K) IV 10 domain of apo(a) as the site of oxPL binding; additionally, mutation of the strong lysine binding site (sLBS) in this domain eliminated oxPL addition. However, the specific residue(s) in apo(a) that bind oxPL remain elusive. In this study, we used site-directed mutagenesis of KIV 10 to identify the key residue of apo(a) involved in covalent attachment of oxPL and induction of inflammatory responses in vitro . Specifically, two residues in KIV 10 capable of binding oxPL by a Michael addition reaction (His 31 and 33) were identified as the probable sites of attachment. We mutagenized the residues to aspartic acid (Asp) and asparagine (Asn), respectively, based on the presence of these residues at these positions in plasminogen kringles. Six-kringle (6K) apo(a) variants harbouring these mutations were expressed in human embryonic kidney 293 cells and purified using lysine-Sepharose chromatography. Covalent oxPL modification of each apo(a) variant was assessed by E06 immunoblotting. Wild-type (WT) 6K and 6KHis31Asp were detected by E06 whereas 6KHis33Asn and 6KAsp56Ala (the LBS mutant) were not. Next, THP-1 macrophages were treated for 4 hours with 300 nmol/L of WT 6K apo(a), 6KHis33Asn, or 6KAsp56Ala. Expression of mRNA encoding the pro-inflammatory cytokine IL-8 by THP-1 cells was measured with quantitative real-time PCR. Relative to control, WT 6K apo(a) treatment of THP-1 cells significantly increased expression of IL8 (2.32-fold; p<0.001). Treatment of THP-1 cells with 6KHis33Asn or 6KAsp56Ala apo(a) did not significantly affect IL8 expression. We have thus identified the site of covalent attachment of oxPL to apo(a) as His33 in KIV 10 and we demonstrate that apo(a)-induced inflammatory responses in macrophages are abolished when oxPL binding is prevented through mutation of this residue. These findings provide avenues for development of therapeutics to potentially mitigate Lp(a)-mediated atherogenesis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.287
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

Explore more

Same venueArteriosclerosis Thrombosis and Vascular BiologySame topicCancer, Lipids, and MetabolismFrench-language works237,207