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NFκB-p65 up regulates P2Y2 receptor expression following induction of infla mmationin intestinal epithelial cells (135.35)

2009· article· en· W4313344842 on OpenAlexaff
Émilie Degagné, Djordje Grbic, Fernand‐Pierre Gendron

Bibliographic record

VenueThe Journal of Immunology · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdenosine and Purinergic Signaling
Canadian institutionsUniversité de Sherbrooke
Fundersnot available
KeywordsMolecular biologyPromoterTranscription factorGene expressionTransfectionInflammationBiologyGeneTranscription (linguistics)Transcriptional regulationCell biologyChemistryImmunologyGenetics

Abstract

fetched live from OpenAlex

Abstract There is an up-regulation in P2Y2 receptor (P2Y2R) expression in tissues of patient suffering from inflammatory bowel diseases. Our study investigates the molecular mechanisms responsible for the transcriptional regulation of the P2Y2R during inflammation. Hypothesis : Under inflammatory conditions, P2Y2R gene expression is regulated at the transcriptionnal level by transcription factor NFκB/p65. P2Y2R gene expression was determined by Q-PCR in Caco-2 cells treated or not with 0.5% DSS. Proximal region of the human P2Y2R promoter was cloned into pGL4.10-Luc vector (pGL4/P2Y2). Caco-2 cells were co-transfected with the pGL4/P2Y2 construction or with deletion mutants and with the transcription factor p65. Inflammation was then induced to Caco-2 cells by a 6h treatment with 0.5% DSS. The interaction between NFκB-p65 and P2Y2R promoter region was determined by luciferase assays and identification of NFκB/p65 potential binding sites determined by EMSA and ChIP assays. We demonstrated that P2Y2R mRNA expression was up regulated in cells treated with 0.5% DSS. We established that p65 can bind to the promoter region of P2Y2 and we demonstrated in vivo, by ChIP assays, that p65 can bind to the P2Y2R proximal promoter. We ultimately identified a binding site for NFκB-p65 in the P2Y2R proximal promoter. These results showed that inflammation up regulates the expression of P2Y2R and that the expression of this gene is regulated at the transcriptional level by p65.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.237
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2009
Admission routes1
Has abstractyes

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