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RIP Kinase death pathways regulate B cell homeostasis and splenic architecture

2020· article· en· W4313372062 on OpenAlexaff
Alexandra L. McLennan, Raksha Parthasarathy, Thomas Hägglöf, Aiden Mattke, Elizabeth Dudley, Elizabeth A. Leadbetter

Bibliographic record

VenueThe Journal of Immunology · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCell death mechanisms and regulation
Canadian institutionsSt. Mary's University
Fundersnot available
KeywordsRIPK1NecroptosisProgrammed cell deathCell biologyBiologyKinaseCaspase 8CaspaseApoptosisImmune systemImmunologyBiochemistry

Abstract

fetched live from OpenAlex

Abstract Receptor-interacting protein kinase (RIPK) 1, RIPK3, and Caspase-8, are essential adapter proteins in death receptor-induced apoptosis and programmed necrosis. Apoptosis and necroptosis are crucial for normal cell development, homeostasis, and immune responses. RIP kinases and Caspase-8 form parts of multiprotein complexes like the Death-Inducing Signaling Complex (DISC) and the necrosome, thus mediating signaling events in these cell death pathways. We compared RipK3−/−, RipK1−/−RipK3−/−Caspase-8−/−, RipK3−/−Caspase-8−/−, and RIPK1 kinase-dead (RIPK1kd) mice to define the role of RIP kinase inflammatory pathways and Caspase-8 in immune responses and lymphocyte development. Preliminary studies show that lack of RIPK1 and Caspase-8, but not RIPK3, leads to the accumulation of Marginal Zone (MZ) B cells. Evidence from mixed-bone marrow chimera experiments reveals an intrinsic requirement for RIPK1 and caspase 8 in normal B cell differentiation post-T2 B cell status. Immunofluorescence showed splenic architecture disorganization in the T cell zone and MZB populations in RIPK-deficient mice. Surprisingly, humoral immune responses to T-dependent and T-independent antigens were largely normal, but immunization-induced splenic GC formation was diminished in mice lacking both Caspase-8 and RIPK3. Elucidation of cell development/death in the context of RIPK1 (whose ubiquitination status influences cellular homeostasis) could lead to better priming of B cells for chemotherapy-induced apoptosis. Previous studies also suggest human RIP kinases are potential therapeutic targets for treating a wide range of autoimmune, inflammatory, and neurodegenerative diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.201
Teacher spread0.189 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2020
Admission routes1
Has abstractyes

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