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Determinants of phagocytic receptor mobility: cytoskeletal picket fences and the pericellular glycocalyx coat.

2017· article· en· W4313384491 on OpenAlexaff
Spencer A. Freeman, Magdalena Riedl, Anthony R. Vega, Pauline Johnson, Diane S. Lidke, Satyajit Mayor, Markku Tammi, Khuloud Jaqaman, Sergio Grinstein

Bibliographic record

VenueThe Journal of Immunology · 2017
Typearticle
Languageen
FieldImmunology and Microbiology
TopicPhagocytosis and Immune Regulation
Canadian institutionsUniversity of British ColumbiaHospital for Sick Children
Fundersnot available
KeywordsGlycocalyxCytoskeletonCell biologyPhagocytosisReceptorTransmembrane proteinBiologyBiophysicsChemistryBiochemistryCell

Abstract

fetched live from OpenAlex

Abstract Phagocytosis is initiated by clustering of receptors upon exposure to target particles bearing multiple ligands. Clustering depends on the ability of receptors to move laterally in the plane of the membrane. Intrinsic proteins were originally thought to diffuse freely along the fluid mosaic of the membrane, but more recent observations indicate that mobility can be severely restricted by the existence of a cytoskeletal fence anchored to the plasmalemma via transmembrane “pickets”. However, the molecular nature of these putative pickets, the manner whereby they associate with the cytoskeleton, and their role in phagocytosis have not been investigated. Based on its abundance and structural features, we surmised that CD44 may serve as a picket in macrophages. We used single-molecule tracking to study its behavior and how it affects the mobility of phagocytic receptors. In addition, because its extracellular domain can bind hyaluronic acid, we found that CD44 serves as a transmembrane connector between the pericellular (glycocalyx) coat and the cytoskeleton. The pericellular coat curtails access of particles to the comparatively short phagocytic receptors. The implications of this transmembrane framework to phagocytosis were investigated and will be discussed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.259
Teacher spread0.244 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes1
Has abstractyes

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