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Tregs from T1D subjects with a susceptible IL-2R gene SNP, respond aberrantly to IL-2 stimulation. (P4080)

2013· article· en· W4313386340 on OpenAlexaff
Ashish Marwaha, Spencer Staiger, Aaron Hirschfield, Constadina Panagiotopoulos, Stuart E. Turvey, Jane H. Buckner, Rusung Tan

Bibliographic record

VenueThe Journal of Immunology · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDiabetes and associated disorders
Canadian institutionsUniversity of British Columbia Hospital
Fundersnot available
KeywordsSTAT5BiologyEffectorSingle-nucleotide polymorphismGenotypeReceptorSTAT proteinGeneInterleukin 2Locus (genetics)ImmunologyCytokineGeneticsSTAT3

Abstract

fetched live from OpenAlex

Abstract Type 1 diabetes (T1D) results from the destruction of beta cells by autoreactive lymphocytes. Regulatory T cells (Tregs) maintain self-tolerance in part by suppressing the effector functions of self-reactive lymphocytes. Tregs require the cytokine interleukin-2 (IL-2) for survival and maintenance of their suppressive function. IL-2 binds to the high-affinity IL-2 receptor (IL-2R), leading to phosphorylation of signal transducer and activator of transcription 5 (STAT5) and downstream transcription of effector proteins.The IL-2 receptor gene has single nucleotide polymorphisms (SNPs), which are associated with T1D incidence. We hypothesized that T1D subjects with SNPs in the IL-2R gene possess Tregs that respond aberrantly to IL-2 and do not optimally induce signaling in the STAT5 pathway. PBMC from T1D subjects with a homozygous susceptible (GG), heterozygous (AG) and homozygous wild-type (AA) genotype for a SNP located in the rs3118470 locus of the IL-2R gene were stimulated with IL-2. Our results indicate that Tregs from individuals with the homozygous susceptible GG genotype have reduced levels of pSTAT5 compared to those with the AA genotype (p=0.0133). This provides evidence that Tregs from T1D subjects with SNPs in the rs3118470 locus of the IL-2R gene have diminished STAT5 phosphorylation in response to IL-2. This is a potential mechanism of defective Treg function in a genetically identifiable subset of children with T1D.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.219
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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