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MyD88-mediated signaling in myo-/fibroblasts is required for control of macrophage maturation under mucosal tolerance in the gut

2022· article· en· W4313405884 on OpenAlexaff
Marina Chulkina, Gabriela Uribe, Bing He, Steven McAninch, Kamil Khanipov, George Golovko, Nikolay S. Markov, Don W. Powell, Ellen J. Beswick, Iryna V. Pinchuk

Bibliographic record

VenueThe Journal of Immunology · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGut microbiota and health
Canadian institutionsWestern University
Fundersnot available
KeywordsInflammationMyeloidBiologyFlow cytometryCD11cCell biologyImmunologyMacrophageMesenchymal stem cellCellIn vitroPhenotypeGeneBiochemistry

Abstract

fetched live from OpenAlex

Abstract Introduction Colonic myo-/fibroblasts (MFs) are cells of mesenchymal origin in a healthy gut are among the key players in the mucosal tolerance that involve MF-restricted MyD88 signaling. MFs and macrophages interact in colonic tissue. However, the mechanisms of MF mediated regulation of macrophages under intestinal mucosal tolerance has emerging evidence. We hypothesized that MF-restricted MyD88 signaling regulates macrophage maturation under colonic mucosal tolerance. Methods RNAseq, qRT-PCR, H&E, and flow cytometry was used for analysis of colonic tissue/cell derived from B6ACTA2CreMyD88fl/fl, B6Col1a2CreMyD88fl/fl and B6RagCol1a2CreMyD88fl/fl MF-specific conditional KO mice. Results MF-specific deletion of MyD88 in vivo resulted in the development of microcolitis and was associated with dysbiotic decrease in Firmicutes to Bacteroidetes bacterial ratio, a hallmark of intestinal inflammation. This process was associated with the increase in colonic expression of genes linked to the inflammatory activity of myeloid cells and accumulation of immature monocyte-derived macrophages. In vitro deletion of MyD88 from MFs (isolated from MF-specific MyD88 conditional KO mice) resulted in changes of basal and TLR4 mediated pathways involved in myeloid cell migration/maturation and inflammation. Using MF-macrophage co-cultures we demonstrated the MF-restricted MyD88 signaling suppresses myeloid cell inflammatory activity. Conclusion Intrinsic MyD88 signaling within colonic mesenchymal cells is critical to control myeloid cell differentiation and inflammatory activity under mucosal tolerance in the gut. Supported by CTSA/TL1 5TL1TR001440-04 UTMB Institute for Translational Science and R01 DK103150 National Institute of Diabetes and Digestive and Kidney Diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.254
Teacher spread0.244 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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