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Mediator complex maintains peripheral T cell tolerance through enforcement of the quiescence module

2022· article· en· W4313408109 on OpenAlexaff
Shuvam Chaudhuri, Yana Zhang, Samuel E. Weinberg, Deyu Fang

Bibliographic record

VenueThe Journal of Immunology · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNF-κB Signaling Pathways
Canadian institutionsWestern University
Fundersnot available
KeywordsCell biologyTranscription factorBiologyMediatorT cellCellChromatin immunoprecipitationImmunologyGeneGeneticsGene expressionPromoterImmune system

Abstract

fetched live from OpenAlex

Abstract T cell tolerance has traditionally been thought to be maintained at stages after T cell receptor mediated activation either through anergy, exhaustion, contraction or T Regulatory cell mediated dominant suppression. Prior to these mechanisms, however, T cell quiescence is the main factor maintaining T cell tolerance. We have identified Mediator Complex Subunit 1 (Med1), as a novel factor responsible for enforcing T cell quiescence. Mice with T cell specific deletion of Med1 display increased levels of T cell activation despite having a normally functional T Regulatory cell compartment. Med1-deficient T cells were more responsive to T cell receptor mediated activation. Bone marrow chimeras revealed Med1 controls T cell quiescence in a cell intrinsic manner. Bulk and single cell transcriptome sequencing revealed Med1’s transcriptional control over key quiescence factors. By analyzing previously published chromatin immunoprecipitation sequencing we found Med1 controlled a transcription factor network rather than direct quiescence molecules. Med1 is a novel factor responsible for actively enforcing the transcriptional network maintaining T cell quiescence. Supported by T32DK007169 R01CA257520 R01CA232347

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.039
Threshold uncertainty score0.323

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.232
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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