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GFI1 KO can develop allergic reaction independently from IL5 and ILC2 cells

2022· article· en· W4313428202 on OpenAlexaff
Jennifer Fraszczak, Zeinab Dalloul, Tarik Möröy

Bibliographic record

VenueThe Journal of Immunology · 2022
Typearticle
Languageen
FieldImmunology and Microbiology
TopicIL-33, ST2, and ILC Pathways
Canadian institutionsMontreal Clinical Research Institute
Fundersnot available
KeywordsAsthmaEosinophilImmunologyAllergyAllergic inflammationInflammationAllergic asthmaMedicineBiology

Abstract

fetched live from OpenAlex

Abstract The number of people living with a chronic inflammatory lung disease, such as asthma, is constantly increasing. The development of resistance to existing therapies and the fact that exposure to air pollution and particular matter are continuously increasing have made asthma a major health problem worldwide. We have observed that in mice lacking the transcriptional factor GFI1 (short for “Growth factor independent 1”) where ILC2 are not functional and IL5 is almost absent, a severe asthmatic inflammatory reaction can still be provoked with increased numbers of eosinophils in the airways. This finding strongly suggests that pathways other than those initiated by IL5/IL5R and ILC2 cells exist that play a major role in severe allergic asthma. We hypothesize that the situation in GFI1 KO mice reflects what it is observed in asthmatic patients that are resistant to the recent therapies. We further posit that GFI1 KO mice is a tool to discover new pathways involved in asthmatic reactions different from the known and established mechanisms involving IL5. We are using this unique mouse model (Gfi1 deficient mice) and high throughput genomic sequencing technologies with a specific bioinformatics approach to identify new molecules pathways mediating the inflammatory reaction in asthma. We expect to reveal new molecular signaling pathways that cause lung inflammation during an allergic asthma reaction, specifically those regulating eosinophil recruitment and activities. Our first results show that GFI1 KO seem to be able to support an allergic reaction though IL17 pathway and Th17 cells. We anticipate to identify of molecular targets, which could be used to develop new, more effective therapies for patients with severe allergic asthma.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.198
Teacher spread0.187 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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