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Record W4318768048 · doi:10.21203/rs.3.rs-2532766/v1

Sequencing, cloning and expression of the panfilovirus glycoprotein specific recombinant mAb 8C12F11 in a CHO mammalian cell line

2023· preprint· en· W4318768048 on OpenAlexfundno aff
Dariusz Plewczyński, Dimitriοs Vlachakis, Erik Bongcam‐Rudloff, Fabien Jovelin, Jacqueline Weyer, Janusz T. Pawęska, Misaki Wayengera

Bibliographic record

VenueResearch Square · 2023
Typepreprint
Languageen
FieldMedicine
TopicViral Infections and Outbreaks Research
Canadian institutionsnot available
FundersEuropean and Developing Countries Clinical Trials PartnershipGrand Challenges CanadaGovernment of Canada
KeywordsRecombinant DNAMolecular biologyComplementary DNABiologyChinese hamster ovary cellMonoclonal antibodyVirologyCloning (programming)Molecular cloningGenBankGeneAntibodyCell cultureGenetics

Abstract

fetched live from OpenAlex

Abstract Background Point-of-care diagnostics are a pivotal component of the medical counter-measures against natural outbreaks or bioterror attacks of Class A pathogens. We previously identified and patented conserved B cells of filovirus glycoproteins for diagnostic, therapeutic and subunit vaccine R & D. In recent in-vitro studies, we validated three mAbs as components of an effective sandwich combo for the capture & detection of zaire ebolavirus (EBOV) species. This work describes the gene sequences and methods for the cloning and expression of a recombinant anti-peptide 2 mAb (8C12F11) in CHO mammalian cells towards faster recombinant in-bulk production in-vitro relative to mice-hybridoma generation in-vivo. Methods Mice hybridoma were prepared & cultured on modified dulbecco's eagle’s medium (MDEM) Total RNA was extracted using RNA-easy isolation reagent (Vazyme), and reverse transcribed into cDNA using SMARTScribe reverse transcriptase. Antibody fragments of heavy (H) and light (L) chains were amplified by rapid amplification of cDNA ends (RACE) and cloned into standard vectors for screening in 5 colonies. Inserts of matching phenotypic colonies were sequenced by Sanger capillary sequencing and aligned by IMGT analysis of VDJ. Isotyping was done by constant region analysis. Results Consensus sequences of the coding DNA of the heavy and light chains of an isotype IgG1/kappa recombinant mice mAb (Genbank accession #s OP966766 and OP966767, respectively) are presented. The biophysical profile of the full expressed recombinant mAb demonstrates a single protein of approximately 142 kda under non reducing conditions and tetramer of duplexes of 23ka and 48kda, respectively. The average area under sec-HPLC curve at a wavelength of 280 nm is 2490.55 Conclusions This work summarizes the first ever gene sequencing, cloning, and expression of the recombinant panfilovirus mAb 8C12F11 in a CHO mammalian cell line

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.153
GPT teacher head0.409
Teacher spread0.255 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2023
Admission routes1
Has abstractyes

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