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Record W4319262139 · doi:10.5694/mja2.51842

First case of mpox diagnosed in Queensland, Australia: clinical and molecular aspects

2023· article· en· W4319262139 on OpenAlexaboutno aff
Adam G. Stewart, Sanmarié Schlebusch, Susan Vlack, Jamie McMahon, Mitchell A. Sullivan, Alyssa T. Pyke, Krispin Hajkowicz

Bibliographic record

VenueThe Medical Journal of Australia · 2023
Typearticle
Languageen
FieldImmunology and Microbiology
TopicPoxvirus research and outbreaks
Canadian institutionsnot available
Fundersnot available
KeywordsGeographyMedicine

Abstract

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A man in his thirties presented immediately on return from a one-month trip to Europe with widespread pustular lesions, tender lymphadenopathy, fever, and headache. Initial contact was with his general practitioner, who notified the local Public Health Unit and the Infectious Diseases Unit. He identified as a man who has sex with men. He had a background of human immunodeficiency virus (HIV) infection, which was well controlled (CD4+ cells, 1190 cells/mm3 [reference interval (RI), 560–1580 cells/mm3]; HIV viral load not detected [limit of quantitation, 20 RNA copies/mL]) with bictegravir 50 mg, emtricitabine 200 mg, and tenofovir alafenamide 25 mg daily. He first noticed a lesion resembling a pimple on the forehead while still overseas, which progressed over the six days before his return (Box 1) followed by a clustering of similar lesions over his right buttock, but no mucosal lesions. More lesions then developed over his thigh and hand. He reported intermittent rectal paraesthesia and spasm, in addition to fever and mild generalised headache. Tender inguinal and cervical lymphadenopathy became established, along with fatigue and malaise. He did not report sore throat, cough, diarrhoea, dysuria, or neck stiffness. He had had sexual contact with known cases of mpox (formerly monkeypox) in Europe. He was admitted to hospital in a single negative pressure room, with contact and airborne precautions. Full blood count and chemistry were normal, and C-reactive protein was 17 mg/L (RI, < 5 mg/L). Testing for Chlamydia trachomatis and Neisseria gonorrhoeae was negative. Swabs were taken from the perianal lesion and sent for National Association of Testing Authorities (NATA)-accredited in-house Orthopoxvirus group real-time polymerase chain reaction (PCR) test targeting the OPG105 gene. Positive by real-time PCR, monkeypox virus (MPXV) DNA from both the perianal lesion and throat specimens was subsequently confirmed using two additional conventional PCR tests targeting the OPG105 and OPG185 genes. Whole genome sequencing and phylogenetic analyses (Supporting Information) of a genome sequence obtained from the perianal specimen (MPXV_QLD_MX00001_2022, GenBank accession number OP235282) demonstrated placement within the human MPXV (hMPXV) sublineage B.1 of clade IIb and was most closely related to other recent 2022 MPXV sequences from the United States, Europe, Australia and Canada (Box 2). Additional laboratory methods are included in the Supporting Information. * Alignments were trimmed to remove the 5’ inverted terminal repeat (ITR) sequence and mask several repetitive regions. The newly classified MPXV phylogenetic clades I (formally Central African), IIa and IIb (formally West African) are highlighted, and the human MPXV (h) sublineages A, A.1, A.1.1 and B.1 are named at key nodes and are correspondingly denoted with coloured branches. Clade I includes a collapsed grouping of 34 sequences. The recent Queensland 2022 MPXV sequence (MPXV_QLD_OP235282_2022) is highlighted in bold blue font. No antiviral therapy was initiated, and his systemic symptoms improved rapidly over 24 hours, at which time he was discharged home to self-isolate under the care of the coronavirus disease 2019 (COVID-19) virtual ward. He lived alone and was instructed to stay at home except for essential activities, such as buying groceries or solo outdoor exercise, and to avoid high risk settings and physical and intimate contact with others until all skin lesions had scabbed over. Mpox is caused by MPXV, a double-stranded DNA virus of the genus Orthopoxvirus in the family Poxviridae.1 The incubation period is five to 21 days, and most clinical infections are self-limiting. Symptoms include rash, fever, lethargy and lymphadenopathy, usually lasting two to four weeks.1 By 5 January 2023, in the current global mpox outbreak, 110 countries have reported cases, including 144 laboratory-confirmed cases in Australia.2 An international case series reported that 95% of patients presented with a rash (almost two-thirds having fewer than ten lesions), 62% reported fever, and 56% lymphadenopathy.3 Ninety-eight per cent of infected individuals were found to be gay or bisexual men, 41% had HIV infection, and MPXV was detected in 91% (29/32) of seminal fluid specimens tested. Concomitant sexually transmissible infections were reported in 29% of cases. Although MPXV was thought to be mainly transmitted via respiratory droplets and close contact with skin lesions, the current global outbreak is notable for spreading primarily during sexual contact. Fomites (eg, towels, sex toys) may be also involved in MPXV transmission. Public health interventions including case and close contact management should be provided as per the mpox guidelines from the Communicable Diseases Network Australia (CDNA).4 We were able to repurpose the existing virtual ward and public health capacity developed originally for the COVID-19 pandemic response, demonstrating the legacy of a stronger public health system able to deal with emerging infectious diseases outbreaks. There are no antiviral therapies for mpox approved by the Therapeutic Goods Administration (TGA). However, the antiviral agent tecovirimat, which inhibits the MPXV envelope wrapping protein, is held in the National Medication Stockpile for the treatment of severe disease and for patients at risk of complications, such as severely immunosuppressed individuals and children less than eight years old.5 Vaccinia immune globulin may be an alternative therapy in pregnancy. Management is generally supportive, with careful attention to analgesia for anogenital and oropharyngeal lesions. The replication-incompetent live virus vaccine modified vaccinia Ankara–Bavarian Nordic (MVA-BN, Jynneos [Bavarian Nordic]) prevents mpox infection, although occasional breakthrough cases are described. In these cases, it may reduce the severity of mpox.6 The vaccine is not registered for use in Australia but is available via a special emergency pathway. Genetic classification of MPXV was recently revised, with new naming conventions comprising of clade I (formerly Central African) and clade II (formerly West African, further divided into IIa and IIb).7 The current 2022 human outbreak is caused by the hMPXV sublineage B.1 of clade IIb, which might cause less severe disease. Open access publishing facilitated by The University of Queensland, as part of the Wiley - The University of Queensland agreement via the Council of Australian University Librarians. Krispin Hajkowicz has received speaking fees, honoraria, advisory board fees, and a research grant from Gilead Sciences, and support from Moderna to attend an educational meeting. Adam Stewart has received speaking fees and honoraria from Gilead Sciences, and support from Pfizer for travel and meeting expenses. Not commissioned; externally peer reviewed. Supporting Information. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.531
Threshold uncertainty score0.947

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0030.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.063
GPT teacher head0.389
Teacher spread0.325 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations2
Published2023
Admission routes1
Has abstractyes

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