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Easy isolation of F4/80 positive macrophages from mouse tissues

2021· article· en· W4320061495 on OpenAlexaff
Frann Antignano, Grace F. T. Poon, Alice Liang, Allen Eaves, Sharon A. Louis, Andy I. Kokaji

Bibliographic record

VenueThe Journal of Immunology · 2021
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmune cells in cancer
Canadian institutionsStemcell Technologies
Fundersnot available
KeywordsMacrophagePeritoneal cavityImmunologyAntibodyPositive selectionPhenotypeBiologySpleenSecretionCell biologyPathologyIn vitroMedicineBiochemistryAnatomy

Abstract

fetched live from OpenAlex

Abstract Macrophages are important and also have critical roles in the development and homeostasis of tissues and organs. Our understanding of macrophages is constantly evolving and expanding, as they are actively studied in many areas of research, including infectious diseases, wound healing, and tumor immunology. Adding to the complexity of macrophage research, subsets of macrophages can be identified throughout the body with diverse phenotypes and functions. Furthermore, macrophage frequency can be highly variable across different tissues, presenting a challenge to obtain highly pure macrophages. To address these challenges, we have developed a simple method to isolate macrophages by targeting F4/80, a well-established murine macrophage marker. Starting with a single-cell suspension from mouse peritoneal cavity, lung, or spleen, F4/80-positive cells were labeled with an antibody complex that links F4/80-positive cells to magnetic particles, then separated using an EasySep™ magnet. Using this method, F4/80-positive cells were enriched from 37.3 ± 9.3% to 94.4 ± 2.9% (mean ± SD; n = 12) from peritoneal lavage fluids, 26.5 ± 2.7% to 94.3 ± 2.8 % (n = 9) from lungs, and 8.0 ± 2.4% to 88.8 ± 3.4% (n = 18) from spleens. Protocols have been optimized to accommodate a range of sample sizes from the various tissue sources. EasySep™-isolated F4/80-positive macrophages are functional, as demonstrated by their ability to uptake FITC-dextran and secrete inflammatory mediators upon activation. Overall, the EasySep™ Mouse F4/80 Positive Selection Kit enables simple and easy isolation of F4/80-positive macrophages in under 25 minutes, streamlining the experimental workflows for researchers studying macrophage biology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.240
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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