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Receptor interacting protein kinase 1 (RIPK1) pathways regulate innate B cell developmental checkpoints and delay effector function

2021· article· en· W4320061499 on OpenAlexaff
Raksha Parthasarathy, Thomas Hagglof, Alexandra L. McLennan, Aiden Mattke, Elizabeth Dudley, Abigail Kumagai, Elizabeth A. Leadbetter

Bibliographic record

VenueThe Journal of Immunology · 2021
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmune Response and Inflammation
Canadian institutionsSt. Mary's University
Fundersnot available
KeywordsRIPK1BiologyCell biologyInnate immune systemB cellGerminal centerImmunologyProgrammed cell deathImmune systemApoptosisAntibodyNecroptosisBiochemistry

Abstract

fetched live from OpenAlex

Abstract Mutations in RIP kinases underlie the recently described human autoimmune syndrome, CRIA, characterized by lymphadenopathy, splenomegaly, and autoantibody production. While disease mechanisms for CRIA remain undescribed, RIP kinases work together with Caspase-8 to regulate cell death, which is critical for normal differentiation of many cell types. Here, we describe a key role for RIPK1 in facilitating innate B cell differentiation and subsequent activation. By comparing RIPK1, RIPK3, and Caspase8 triple deficient and RIPK3, Caspase 8 double deficient mice, we identified selective contributions of RIPK1 to an accumulation of murine splenic Marginal Zone (MZ) B cells and B1-b cells. We used mixed bone-marrow chimeras to determine that innate B cell commitment required B cell-intrinsic RIPK1, RIPK3, and Casp8 sufficiency. RIPK1 regulated MZ B cell differentiation rather than development and RIPK1 mediates its innate immune effects independent of the RIPK1 kinase domain. NP-KLH/alum and NP-Ficoll vaccination of RIPK3, Casp8, and RIPK1 triple deficient mice revealed uniquely delayed T-dependent and T-independent IgG responses, abnormal splenic germinal center architecture, and reduced extrafollicular plasmablast formation compared to double deficient and WT mice. RIPK1 deficiency was beneficial for survival following lethal, systemic Streptococcus pneumoniae infection, confirming the functionality of innate B cell populations which increased in the absence of RIPK1. Thus, RIPK1 orchestrates B cell fate, and delayed effector function, through a B cell-intrinsic mechanism.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.200
Teacher spread0.191 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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