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Record W4323364651 · doi:10.1101/2023.03.02.530837

3D Co-culture Model on the Role of Vimentin in Notch Signaling and Vascularization

2023· preprint· en· W4323364651 on OpenAlexaff
Khalil Dayekh, Kibret Mequanint

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldMedicine
TopicCell Adhesion Molecules Research
Canadian institutionsWestern University
Fundersnot available
KeywordsVimentinNotch signaling pathwayCell biologySignal transductionNeovascularizationAngiogenesisBiologyCancer researchImmunologyImmunohistochemistry

Abstract

fetched live from OpenAlex

Abstract The Notch signaling pathway is a conserved pathway that is central in vascular tissue development and pathology. Because this pathway controls such important events, it is regulated at multiple steps of its cascade, such as post-translational modification of its ligand and receptor. Recent studies have suggested regulation of the Notch signaling by a pulling force to be required to activate Notch signaling. In this exploratory study, 3D fibrin gels were used as a co-culture system of endothelial cells and 10T1/2 cells to assess whether vimentin is implicated in the regulation of Notch signaling and neovascularization. The results show that 10T1/2 cells increase the expression of Hes-1, Hes-5, and Acta2 during co-culture with human coronary artery endothelial cells (HCAECs) and that vimentin knock-down using siRNA partially reduced the expression under static conditions. On the other hand, while the same trend was observed for Hes-5 under dynamic conditions, Acta2 was overexpressed, and vimentin knock-down did not affect its expression levels. Moreover, the development of newly formed micro-vessels is observed in 3D fibrin gels in the presence of VEGF but could not be formed when vimentin expression was knocked down. These results suggest that vimentin plays a secondary role in Notch signaling; however, it is essential for neovascularization.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.262
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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