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Record W4323366110 · doi:10.21105/joss.05091

Biosiglive: an Open-Source Python Package for Real-timeBiosignal Processing

2023· article· en· W4323366110 on OpenAlexafffund
Amedeo Ceglia, Felipe Verdugo, Mickaël Begon

Bibliographic record

VenueThe Journal of Open Source Software · 2023
Typearticle
Languageen
FieldComputer Science
TopicModeling and Simulation Systems
Canadian institutionsUniversité de Montréal
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsBiosignalOpen sourcePython (programming language)Computer scienceOperating systemSoftware

Abstract

fetched live from OpenAlex

biosiglive aims to provide a simple and efficient way to access and process biomechanical data in real time.It was conceived as user-friendly software aimed for both non-expert and expert programmers.The library uses interfaces to access data from several sources, such as motion capture software or any Python software development kit (SDK).Some interfaces are already implemented for Vicon Nexus motion capture (Oxford, UK) and Delsys electromyography SDK (EMG) (Boston, USA).That say, any additional interface can be added as custom interface using the abstract class.biosiglive was designed for biosignals, therefore, existing classes represent data collected from standard acquisition systems in biomechanics, such as markers for motion capture or EMG.Methods are available to process in real-time any input signal.Data can be saved in a binary file at each time frame to avoid any data loss in case of system shutdown.Data can also be displayed using the LivePlot class, which is based on PyQtGraph (C++ core) and allows, therefore, fast real-time displaying.Finally, 'biosiglive' was conceived as a flexible real-time data processing and streaming tool adaptable to various set-ups, software, and systems.Therefore, a TCP/IP connection module was implemented to send data to a distant port to be used by any other system.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: none
Teacher disagreement score0.052
Threshold uncertainty score0.173

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0040.003
Research integrity0.0010.004
Insufficient payload (model declined to judge)0.0520.027

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.076
GPT teacher head0.354
Teacher spread0.278 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2023
Admission routes2
Has abstractyes

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