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Record W4328010626 · doi:10.5376/cmb.2023.13.0002

Identification and Bioinformatics Analysis of TCP Family Genes in Tree Peony

2023· article· en· W4328010626 on OpenAlex
Yanzhao Zhang, Xin Luo, Huiyun Li, Xujia Duan, Yan Zhang, Fanjuan Meng

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueComputational Molecular Biology · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
Topic14-3-3 protein interactions
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyGeneGene familyPhylogenetic treeGeneticsBotanyGenome

Abstract

fetched live from OpenAlex

The TCP (Teosinte branched1/Cincinnata/proliferating cell factor) family gene is a kind of plant specific transcription factor, which plays a significant role in regulating plant growth and development. In this study, 18 TCP genes were identified from the tree peony transcriptome data, the molecular weight was between 18 978.32 and 51 789.56 Da, the isoelectric points was between 5.81 and 9.45, and the subcellular localization prediction of TCP family members was in the nucleus. The classification of conserved amino acids in the tree peony TCP domain was similar to that of Arabidopsis thaliana. Phylogenetic analysis showed that the TCP proteins of tree peony were divided into two categories, Class Ⅰ contained 10 TCP members, and Class Ⅱ contained 8 TCP members. MEME analysis results showed that 15 conserved domains were found in the tree peony TCP protein, Motif 1 was the TCP domain, and was found in all TCP members. Meanwhile, the transcription level of the tree peony TCP genes in bud, leaf, petal, piebaldness, stamen, pistil and seed were analyzed. This article systematically analyzed the tree peony TCP family genes, which provided a scientific basis for further research on functional genes and molecular breeding in tree peony.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.863
Threshold uncertainty score0.404

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.305
Teacher spread0.293 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it