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Record W4362664032 · doi:10.1038/s41597-023-01946-1

Data and Tools Integration in the Canadian Open Neuroscience Platform

2023· article· en· W4362664032 on OpenAlexafffundabout
Jean‐Baptiste Poline, Samir Das, Tristan Glatard, Cécile Madjar, Erin W. Dickie, Xavier Lecours, Thomas Beaudry, Natacha Beck, Brendan Behan, Shawn T. Brown, David Bujold, Michael J. S. Beauvais, B. Caron, Candice Czech, Moyez Dharsee, Mathieu Dugré, Kenneth Evans, Tom Gee, Giulia Ippoliti, Gregory Kiar, Bartha Maria Knoppers, Tristan Kuehn, Diana Le, Derek Lo, Mandana Mazaheri, D.R. MacFarlane, Naser Muja, Emmet A. O’Brien, Liam O’Callaghan, Santiago Paiva, Patrick Park, Darcy Quesnel, Henri Rabelais, Pierre Rioux, Mélanie Legault, Jennifer Tremblay‐Mercier, David Rotenberg, Jessica Stone, Ted Strauss, Ksenia Zaytseva, Joey Tianyi Zhou, Simon Duchesne, Ali R. Khan, Sean Hill, Alan C. Evans

Bibliographic record

VenueScientific Data · 2023
Typearticle
Languageen
FieldDecision Sciences
TopicScientific Computing and Data Management
Canadian institutionsDouglas Mental Health University InstituteRobarts Clinical TrialsConcordia UniversityMcGill University and Génome Québec Innovation CentreIndoc ResearchOntario Brain InstituteKrembil FoundationMcGill University Health CentreMcGill UniversityUniversity of TorontoWestern UniversityMcGill Genome CentreMontreal Neurological Institute and Hospital
FundersInstitut de Cardiologie de MontréalUniversity of TorontoMcGill UniversitySimon Fraser UniversityNational Institutes of HealthCanada First Research Excellence FundCanada Research ChairsHealth CanadaGovernment of OntarioConcordia UniversityRéseau en Bio-Imagerie du QuebecCompute CanadaNational Institute of Mental HealthOntario Brain InstituteFondation Brain CanadaNational Institute of Biomedical Imaging and BioengineeringUniversité Laval
KeywordsComputer scienceMetadataData sharingWorld Wide WebReuseData scienceSoftwareOpen sciencePoint (geometry)Data managementOpen dataDatabaseOperating system

Abstract

fetched live from OpenAlex

We present the Canadian Open Neuroscience Platform (CONP) portal to answer the research community's need for flexible data sharing resources and provide advanced tools for search and processing infrastructure capacity. This portal differs from previous data sharing projects as it integrates datasets originating from a number of already existing platforms or databases through DataLad, a file level data integrity and access layer. The portal is also an entry point for searching and accessing a large number of standardized and containerized software and links to a computing infrastructure. It leverages community standards to help document and facilitate reuse of both datasets and tools, and already shows a growing community adoption giving access to more than 60 neuroscience datasets and over 70 tools. The CONP portal demonstrates the feasibility and offers a model of a distributed data and tool management system across 17 institutions throughout Canada.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.010
metaresearch head score (Gemma)0.020
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesOpen science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.995
Threshold uncertainty score0.297

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0100.020
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0140.022
Science and technology studies0.0080.003
Scholarly communication0.0120.008
Open science0.0050.015
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0110.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.730
GPT teacher head0.497
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2023
Admission routes3
Has abstractyes

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