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Record W4362664032 · doi:10.1038/s41597-023-01946-1

Data and Tools Integration in the Canadian Open Neuroscience Platform

2023· article· en· W4362664032 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.
aboutThe title or abstract carries a Canadian signal from the geographic lexicon.

Bibliographic record

VenueScientific Data · 2023
Typearticle
Languageen
FieldDecision Sciences
TopicScientific Computing and Data Management
Canadian institutionsDouglas Mental Health University InstituteRobarts Clinical TrialsConcordia UniversityMcGill University and Génome Québec Innovation CentreIndoc ResearchOntario Brain InstituteKrembil FoundationMcGill University Health CentreMcGill UniversityUniversity of TorontoWestern UniversityMcGill Genome CentreMontreal Neurological Institute and Hospital
FundersInstitut de Cardiologie de MontréalUniversity of TorontoMcGill UniversitySimon Fraser UniversityNational Institutes of HealthCanada First Research Excellence FundCanada Research ChairsHealth CanadaGovernment of OntarioConcordia UniversityRéseau en Bio-Imagerie du QuebecCompute CanadaNational Institute of Mental HealthOntario Brain InstituteFondation Brain CanadaNational Institute of Biomedical Imaging and BioengineeringUniversité Laval
KeywordsComputer scienceMetadataData sharingWorld Wide WebReuseData scienceSoftwareOpen sciencePoint (geometry)Data managementOpen dataDatabaseOperating system

Abstract

fetched live from OpenAlex

We present the Canadian Open Neuroscience Platform (CONP) portal to answer the research community's need for flexible data sharing resources and provide advanced tools for search and processing infrastructure capacity. This portal differs from previous data sharing projects as it integrates datasets originating from a number of already existing platforms or databases through DataLad, a file level data integrity and access layer. The portal is also an entry point for searching and accessing a large number of standardized and containerized software and links to a computing infrastructure. It leverages community standards to help document and facilitate reuse of both datasets and tools, and already shows a growing community adoption giving access to more than 60 neuroscience datasets and over 70 tools. The CONP portal demonstrates the feasibility and offers a model of a distributed data and tool management system across 17 institutions throughout Canada.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.060
metaresearch head score (Gemma)0.015
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Science and technology studies, Scholarly communication, Open science, Insufficient payload (model declined to judge)
Consensus categoriesMetaresearch, Open science
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.609
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0600.015
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.007
Science and technology studies0.0020.001
Scholarly communication0.0350.007
Open science0.0330.019
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.730
GPT teacher head0.497
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it