BnaOmics: A comprehensive platform combining pan-genome and multi-omics data from Brassica napus
Why this work is in the frame
A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.
Bibliographic record
Abstract
A comprehensive platform combining pan-genome and multi-omics data from Brassica napus Dear Editor, Brassica napus was originally formed $7500 years ago by the interspecific hybridization of B. rapa and B. oleracea (Chalhoub et al., 2014).It accounts for approximately 13%-16% of global vegetable oil production and provides an excellent model for polyploid genomics and evolutionary research in plants.Currently, the Brassicaceae Database (BRAD V3.0; Chen et al., 2022), Genoscope (https://www.genoscope.cns.fr/brassicanapus/), and Ensembl Plants (https://plants.ensembl.org)are used for genomic research pertaining to B. napus.However, they only provide genome browsers for research into the B. napus cultivar Darmorbzh.The B. napus pan-genome information resource (BnPIR) also provides eight B. napus reference genomes (Song et al., 2021), gene information, and resequencing data.The B. napus variation information resource (BnVIR) provides information on genetic variation, including single-nucleotide polymorphisms (SNPs), insertions or deletions (INDELs), and structural variations (SVs) (Yang et al., 2022).
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.001 | 0.003 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it