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Record W4378373742 · doi:10.21203/rs.3.rs-2921296/v1

Timing dependent neuronal migration is regulated by Cdk5-meidated phosphorylation of JIP1

2023· preprint· en· W4378373742 on OpenAlexaff
Qinglin Fei, Doo Soon Im, Tianwen Huang, Dianbo Qu

Bibliographic record

VenueResearch Square · 2023
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics and Neurodevelopmental Disorders
Canadian institutionsHotchkiss Brain InstituteUniversity of Ottawa
FundersNational Natural Science Foundation of China
KeywordsCyclin-dependent kinase 5PhosphorylationNeuroscienceCell biologyPsychologyBiology

Abstract

fetched live from OpenAlex

Abstract The evolution of the mammalian brain, particularly the cerebral cortex, is characterized by an increase in size and complexity. Proper development of the cerebral cortex involves several coordinated events such as differentiation and migration, which plays a critical role in establishing a precise six-layered architecture. Our previous study has shown that phosphorylation of JIP1 at T205 by Cdk5 affects the axonal outgrowth. However, the spatiotemporal expression patterns and functions of these three genes in different cell types during cortical development are not well understood. In this study, we interrogated single-cell RNA-sequencing (scRNA-seq) data of mouse embryonic cortex and revealed that Cdk5, Cdk5r1 (p35) and Mapk8ip1 (JIP1) are dynamically expressed in intermediate progenitors (IPs). Pseudotime analysis showed that the expression of these three genes increased simultaneously in IPs during neuronal migration and differentiation. By manipulating the expression of JIP1 and phospho-mimic JIP1 using in utero electroporation, we demonstrated that phosphorylated JIP1 at T205 influenced the temporal migration of neurons. Taken together with previous findings that phospho-JIP1 at T205 regulates axonal growth, our study reveals a mechanism by which Cdk5, p35, and JIP1 coordinate to regulate neuron specification in the developing neocortex.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.051
GPT teacher head0.344
Teacher spread0.294 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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