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Record W4379409886 · doi:10.37590/able.v43.art2

Deconstructing the lab notebook and scaffolding assessments in a course-based undergraduateresearch experience (CURE)

2023· article· en· W4379409886 on OpenAlexaff
Laura Atkinson

Bibliographic record

VenueAdvances in Biology Laboratory Education · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics, Bioinformatics, and Biomedical Research
Canadian institutionsMount Royal University
Fundersnot available
KeywordsCourse (navigation)Undergraduate researchScaffoldMathematics educationComputer sciencePsychologyEngineeringMedical educationMedicineProgramming language

Abstract

fetched live from OpenAlex

The pedagogical framework of a course-based undergraduate research experience (CURE) involves having students learn essential experimental techniques, design an experiment, carry out the experiment, interpret data and communicate results (McLaughlin & Coyle, 2016).Common assessments used in a CURE are a research proposal, lab notebook, and manuscript/poster/presentation.However, there are several challenges with the use of the lab notebook as an assessment tool.For example, grading of the lab notebook often occurs after an experiment is complete.Errors in understanding or calculations are not caught prior to the students performing the experiment which can lead to a waste of expensive reagents and potentially limit the ability to do CUREs with molecular techniques.Furthermore, finding and assessing information in a lab notebook is extremely time consuming and comments may not be read or understood.To address these issues, I deconstructed the lab notebook into experimental plans and data submissions.Using these assessments, my observations in the lab (echoed in student feedback) are that students come to the lab more prepared, understand the protocol, and feel confident in their ability to troubleshoot if something goes wrong.Importantly, the experimental plans can be peer graded in class while the instructor goes over the information.This provides important, timely, and relevant feedback to the students.Lastly, the use of experimental plans and data submissions allows the scaffolding of assessments for the scientific communication pieces (manuscript/poster/presentation).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.033
metaresearch head score (Gemma)0.087
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.967
Threshold uncertainty score0.172

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0330.087
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0030.001
Science and technology studies0.0030.005
Scholarly communication0.0140.008
Open science0.0060.012
Research integrity0.0030.008
Insufficient payload (model declined to judge)0.0130.009

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.410
Teacher spread0.389 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designObservational
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2023
Admission routes1
Has abstractyes

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