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<i>Mesoaciditogaceae</i>

2023· other· en· W4380081934 on OpenAlexaff
Stéphane L’Haridon, Camilla Nesbø, Anne A. Farrell, Olga Zhaxybayeva

Bibliographic record

VenueBergey's Manual of Systematics of Archaea and Bacteria · 2023
Typeother
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Phylogenetic Studies
Canadian institutionsUniversity of TorontoUniversity of Alberta
Fundersnot available
KeywordsSeawaterGenusThermophile16S ribosomal RNABiologyHydrothermal ventType genusBacteriaHydrothermal circulationType speciesHabitatType (biology)BotanyZoologyEcologyGeneticsPaleontology

Abstract

fetched live from OpenAlex

Abstract Me.so.a.ci.di.to.ga.ce'ae. N.L. fem. n. Mesoaciditoga type genus of the family; L. fen, pl. n. suff. ‐aceae, ending denoting a family; N.L. fem. pl. n. Mesoaciditogaceae , the Mesoaciditoga family. The family Mesoaciditogaceae , the only family in the order Mesoaciditogales , comprises thermophilic, weakly acidophilic bacteria. The cells stain Gram‐negative and are sheathed short rods . Members of this family are heterotrophs and anaerobes , growing optimally at salinities that range from freshwater to marine seawater. Known habitats are deep‐sea hydrothermal vents and acidic terrestrial hot springs. The family currently accommodates two genera, Mesoaciditoga and Athalassotoga . Only two species have been described, but additional 16S rRNA sequences and metagenomes from environmental samples suggest that Mesoaciditogaceae may include additional genera whose representatives are not yet isolated. DNA G + C content (mol%) : 39.9–40.6 (genome analysis). Type genus : Mesoaciditoga Reysenbach et al. 2013 VP . Taxonomic and Nomenclature Notes According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the family Mesoaciditogaceae is: correct name (last update, February 2025) * . LPSN classification: Bacteria / Thermotogati / Thermotogota / Thermotogae / Mesoaciditogales / Mesoaciditogaceae The family Mesoaciditogaceae can also be recovered in the Genome Taxonomy Database (GTDB) as f__Mesoaciditogaceae (version v220) ** . GTDB classification: d__Bacteria / p__Thermotogota / c__Thermotogae / o__Mesoaciditogales / f__Mesoaciditogaceae * Meier‐Kolthoff et al. ( 2022 ). Nucleic Acids Res , 50 , D801 – D807 ; DOI: 10.1093/nar/gkab902 ** Parks et al. ( 2022 ). Nucleic Acids Res , 50 , D785 – D794 ; DOI: 10.1093/nar/gkab776

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.634
Threshold uncertainty score0.925

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.239
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2023
Admission routes1
Has abstractyes

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