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Record W4380302532 · doi:10.1073/pnas.2219431120

Cross talk between Paneth and tuft cells drives dysbiosis and inflammation in the gut mucosa

2023· article· en· W4380302532 on OpenAlexfundno aff
Nathalie Coutry, Julie Nguyen, Salima Soualhi, François Gerbe, Victoria Meslier, Valérie Dardalhon, Mathieu Almeida, Benoît Quinquis, Florence Thirion, Fabien Herbert, Imène Gasmi, A. Lamrani, Alicia Giordano, Pierre Cesses, L. Garnier, Steeve Thirard, Denis Greuet, Chantal Cazevieille, Florence Bernex, Christelle Bressuire-Isoard, Douglas J. Winton, Ichiro Matsumoto, Hervé M. Blottière, Naomi Taylor, Philippe Jay

Bibliographic record

VenueProceedings of the National Academy of Sciences · 2023
Typearticle
Languageen
FieldNursing
TopicBiochemical Analysis and Sensing Techniques
Canadian institutionsnot available
FundersNational Cancer InstituteInstitute of GeneticsNational Institutes of HealthLaboratoire d'Excellence EpiGenMedDirection Générale de l’offre de SoinsInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementUniversité de MontpellierInstitut National de la Santé et de la Recherche MédicaleInstitut National Du CancerAgroParisTechCentre National de la Recherche ScientifiqueLigue Contre le CancerFondation pour la Recherche MédicaleAgence Nationale de la Recherche
KeywordsTuftDysbiosisInflammationCell biologyPaneth cellIntestinal mucosaBiologyImmunologyMedicineGut floraInternal medicineSmall intestineEngineering

Abstract

fetched live from OpenAlex

Gut microbiota imbalance (dysbiosis) is increasingly associated with pathological conditions, both within and outside the gastrointestinal tract. Intestinal Paneth cells are considered to be guardians of the gut microbiota, but the events linking Paneth cell dysfunction with dysbiosis remain unclear. We report a three-step mechanism for dysbiosis initiation. Initial alterations in Paneth cells, as frequently observed in obese and inflammatorybowel diseases patients, cause a mild remodeling of microbiota, with amplification of succinate-producing species. SucnR1-dependent activation of epithelial tuft cells triggers a type 2 immune response that, in turn, aggravates the Paneth cell defaults, promoting dysbiosis and chronic inflammation. We thus reveal a function of tuft cells in promoting dysbiosis following Paneth cell deficiency and an unappreciated essential role of Paneth cells in maintaining a balanced microbiota to prevent inappropriate activation of tuft cells and deleterious dysbiosis. This succinate-tuft cell inflammation circuit may also contribute to the chronic dysbiosis observed in patients.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.334
Threshold uncertainty score0.298

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.040
GPT teacher head0.324
Teacher spread0.284 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations33
Published2023
Admission routes1
Has abstractyes

Explore more

Same venueProceedings of the National Academy of SciencesSame topicBiochemical Analysis and Sensing TechniquesFrench-language works237,207