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Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge

2023· article· en· W4380990775 on OpenAlexafffund
Gabriel Girard, Jonathan Rafael‐Patiño, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo‐Pineda, Matteo Battocchio, Zuzana Piskořová, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak, Matteo Frigo, Sara Sedlar, Samuel Deslauriers‐Gauthier, Ivana Kojčić, Mauro Zucchelli, Hiba Laghrissi, Yang Ji, Rachid Deriche, Kurt G. Schilling, Bennett A. Landman, Alberto Cacciola, Gianpaolo Antonio Basile, Salvatore Bertino, Nancy R. Newlin, Praitayini Kanakaraj, François Rheault, Patryk Filipiak, Timothy M. Shepherd, Ying‐Chia Lin, Dimitris G. Placantonakis, Fernando E. Boada, Steven H. Baete, Erick Hernández-Gutiérrez, Alonso Ramírez-Manzanares, Ricardo Coronado‐Leija, Pablo Stack-Sánchez, Luis Concha, Maxime Descoteaux, Sina Mansour L., Caio Seguin, Andrew Zalesky, Kenji Marshall, Erick J. Canales‐Rodríguez, Ye Wu, Sahar Ahmad, Pew-Thian Yap, Antoine Théberge, Florence Gagnon, Frédéric Massi, Elda Fischi-Gómez, Rémy Gardier, Juan Luis Villarreal Haro, Marco Pizzolato, Emmanuel Caruyer, Jean‐Philippe Thiran

Bibliographic record

VenueNeuroImage · 2023
Typearticle
Languageen
FieldMedicine
TopicAdvanced Neuroimaging Techniques and Applications
Canadian institutionsMcGill UniversityUniversité de Sherbrooke
FundersNational Institute of Biomedical Imaging and BioengineeringNational Institute of Neurological Disorders and StrokeNational Institute on AgingNational Health and Medical Research CouncilNational Institute of Mental HealthHorizon 2020 Framework ProgrammeNarodowa Agencja Wymiany AkademickiejDirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de MéxicoNatural Sciences and Engineering Research Council of CanadaCentre Hospitalier Universitaire VaudoisCentre d'Imagerie BioMédicaleEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentUniversité de LausanneHôpitaux Universitaires de GenèveNvidiaUniversité de GenèveAcademic Computer Centre Cyfronet, AGH University of Science and TechnologyPolska Akademia NaukNational Natural Science Foundation of ChinaNational Institutes of HealthSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungNational Institute on Drug AbuseÉcole Polytechnique Fédérale de LausanneFundacja na rzecz Nauki PolskiejEuropean CommissionConsejo Nacional de Ciencia y TecnologíaNational Institute of Allergy and Infectious DiseasesAgence Nationale de la RechercheMinisterstwo Edukacji i NaukiInfrastruktura PL-GridNational Science Foundation
KeywordsDiffusion MRIComputer scienceGround truthTractographyDiffusionMonte Carlo methodBinary numberTask (project management)Scale (ratio)Functional connectivityArtificial intelligenceData miningAlgorithmPattern recognition (psychology)Magnetic resonance imagingMathematicsStatisticsPhysicsNeurosciencePsychology

Abstract

fetched live from OpenAlex

Estimating structural connectivity from diffusion-weighted magnetic resonance imaging is a challenging task, partly due to the presence of false-positive connections and the misestimation of connection weights. Building on previous efforts, the MICCAI-CDMRI Diffusion-Simulated Connectivity (DiSCo) challenge was carried out to evaluate state-of-the-art connectivity methods using novel large-scale numerical phantoms. The diffusion signal for the phantoms was obtained from Monte Carlo simulations. The results of the challenge suggest that methods selected by the 14 teams participating in the challenge can provide high correlations between estimated and ground-truth connectivity weights, in complex numerical environments. Additionally, the methods used by the participating teams were able to accurately identify the binary connectivity of the numerical dataset. However, specific false positive and false negative connections were consistently estimated across all methods. Although the challenge dataset doesn't capture the complexity of a real brain, it provided unique data with known macrostructure and microstructure ground-truth properties to facilitate the development of connectivity estimation methods.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.011
metaresearch head score (Gemma)0.078
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.011
Threshold uncertainty score0.059

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0110.078
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0010.001
Science and technology studies0.0010.002
Scholarly communication0.0020.004
Open science0.0020.003
Research integrity0.0030.003
Insufficient payload (model declined to judge)0.0060.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.096
GPT teacher head0.354
Teacher spread0.258 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations14
Published2023
Admission routes2
Has abstractyes

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