Differences in Saprophytic Growth, Virulence, Genomes, and Secretomes of Ilyonectria robusta and I. mors-panacis Isolates from Roots of American Ginseng (Panax quinquefolius)
Why this work is in the frame
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Bibliographic record
Abstract
A comparison of the virulence, saprophytic growth, and genomes of 12 isolates of Ilyonectria mors-panacis and 4 isolates of I. robusta from Canada pathogenic to Panax quinquefolius was made. There were no significant differences in the average lesion size on detached roots between isolates of the two Ilyonectria species or isolates that originated from infected roots in first- or second-crop ginseng soils. This did not support the hypotheses that I. mors-panacis is always more virulent than I. robusta or that there is selection for higher virulence during the first crop. However, the average growth rate on potato dextrose agar for I. robusta was significantly greater than that of I. mors-panacis, and the average total genome size of I. robusta isolates was significantly smaller with a significantly higher GC content. On dendrograms based on nucleotide sequences of all predicted exons of the genomes, I. robusta isolates were distinguishable from I. mors-panacis isolates, which were similar but could be separated into types 1 and 2. The difference between type 1 and type 2 I. mors-panacis was not related to geographical origin, virulence, growth rate, or mating type. However, the division was also observed for the total predicted secretome, most notably small secreted cysteine-rich proteins and secreted proteases, indicating that type 1 and 2 isolates of I. mors-panacis may interact differently with their environment.
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it