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Record W4381377683 · doi:10.2337/db23-434-p

434-P: Urinary Proteome Classifiers in Prediabetes Clusters

2023· article· en· W4381377683 on OpenAlexaboutno aff
Anja Schork, Andreas Fritsche, Erwin Schleicher, Andreas Peter, Martin Heni, Norbert Stefan, REINER JUMPERTZ VON SCHWARTZENBERG, Harald Mischak, Justyna Siwy, Andreas L. Birkenfeld, Róbert Wágner

Bibliographic record

VenueDiabetes · 2023
Typearticle
Languageen
FieldChemistry
TopicAdvanced Proteomics Techniques and Applications
Canadian institutionsnot available
Fundersnot available
KeywordsPrediabetesMedicineDiabetes mellitusInternal medicineType 2 diabetesUrineBody mass indexKidney diseaseDiabetic nephropathyUrinary systemCohortEndocrinology

Abstract

fetched live from OpenAlex

Objective: Patients with prediabetes have recently been classified into 6 prediabetes clusters, that stratify the risk of diabetes and complications. Cluster 1, 2 and 4 are low risk-clusters while cluster 3, 5 and 6 are high-risk clusters. Of notice, especially patients of cluster 6 have an elevated risk of nephropathy despite their low diabetes risk. To investigate if differences across clusters can be captured from urine peptidome, we studied differences in pre-specified urinary peptidome classifiers across age and sex matched participants from 6 prediabetes clusters (n=249, median age 46 (IQR 39 - 54) years, BMI 30.4 (26.9 - 39.4) kg/m², HbA1c 5.5 (5.3 - 5.8) %). Methods: Peptides in spot urine samples collected at the University Hospital Tuebingen from 11/2004 to 11/2012 were investigated using capillary electrophoresis coupled mass spectroscopy. The following classifiers based on multiple urine peptides had been developed to detect different conditions and were assessed: CKD273 (chronic kidney disease, CKD), validated in a large clinical cohort), HF1 and HF2 (heart failure), CAD238 (coronary artery disease, CAD), Col_death (collagen type-1 turnover), solid_tumor (solid tumor). Matsuda index and NEFA insulin sensitivity index (ISI) were used for estimation of insulin sensitivity. Results: The urinary peptidome classifiers CKD273, HF2 and CAD238 were significantly different between prediabetes clusters, with elevated values in cluster 6 compared to the healthiest cluster 2. These classifiers also correlated with Matsuda index and NEFA ISI. Classifiers HF1, Col_death and solid_tumor did not associate with prediabetes clusters or insulin sensitivity indices. Conclusions: Beyond corroboration of a previously described increased risk of CKD, urinary peptidome classifiers suggest elevated risk of heart failure and coronary artery disease in persons of the prediabetes cluster 6. This could underlie increased mortality in this group, independent of diabetes development. Disclosure A.Schork: None. A.L.Birkenfeld: None. R.Wagner: Advisory Panel; Daiichi Sankyo, Speaker's Bureau; Novo Nordisk, Sanofi. A.Fritsche: Advisory Panel; Novo Nordisk, Lilly, Sanofi, Boehringer-Ingelheim, Speaker's Bureau; AstraZeneca, SYNLAB Holding Deutschland GmbH. E.D.Schleicher: None. A.Peter: None. M.Heni: Advisory Panel; Boehringer-Ingelheim, Sanofi, Research Support; Boehringer Ingelheim Inc., Speaker's Bureau; Lilly, Bayer Inc., Sanofi, Boehringer-Ingelheim, Novo Nordisk, Amryt Pharma Plc. N.Stefan: Advisory Panel; Pfizer Inc., Research Support; Sanofi, Speaker's Bureau; AstraZeneca, Boehringer Ingelheim (Canada) Ltd., Lilly Diabetes, Novo Nordisk, Sanofi-Aventis Deutschland GmbH. R.Jumpertz von schwartzenberg: Other Relationship; Sanofi, Amgen Inc., Lilly, Novo Nordisk. H.Mischak: Stock/Shareholder; Mosaiques Diagnostics. J.Siwy: Employee; Mosaiques-Diagnostics GmbH.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.262
Teacher spread0.247 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2023
Admission routes1
Has abstractyes

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