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Record W4383058591 · doi:10.1101/pdb.prot108161

Whole-Larva Cryosectioning and Immunolabeling of<i>Drosophila</i>Larvae

2023· article· en· W4383058591 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueCold Spring Harbor Protocols · 2023
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicFossil Insects in Amber
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsDrosophila melanogasterCoronal planeImmunolabelingResolution (logic)BiologyLarvaMelanogasterAnatomyPlane (geometry)MicroscopyMaterials scienceOpticsPhysicsBotanyComputer scienceGeometryMathematicsGenetics

Abstract

fetched live from OpenAlex

Resolution in microscopy—the shortest distance between which objects can be distinguished from each other—is crucial for our ability to view details of biological samples. The theoretical resolution limit of light microscopy is 200 nm in the x,y -plane. Using stacks of x,y images, 3D reconstructions of the z -plane of a specimen can be achieved. However, because of the nature of light diffraction, the resolution of the z -plane reconstitutions is closer to 500–600 nm. Peripheral nerves of the fruit fly Drosophila melanogaster consist of several thin layers of glial cells surrounding the underlying axons. The size of these components can be well under the resolution of z -plane 3D reconstructions, thus making it difficult to determine details of coronal views through these peripheral nerves. Here, we describe a protocol to obtain and immunolabel 10-μm cryosections of whole third-instar larvae of the fruit fly Drosophila melanogaster . Cryosectioning the larvae using this method converts visualization of coronal sections of the peripheral nerve into the x,y -plane and brings the resolution down from 500–600 nm to 200 nm. Theoretically, this protocol can also be used with some modifications to obtain cross sections of other tissues.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.741
Threshold uncertainty score0.302

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.256
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it