Identification of Gene Family in Pecan (<i>Carya illinoinensis</i>) and Its Expression in Graft Healing
Bibliographic record
Abstract
Aux/IAA (Auxin/Indole- 3- Acetic Acid) family, one of the early response gene family of auxin signals, is involved in regulating numerous aspects of plant growth and development. As an important economic plant, the identification of Aux/IAA family genes in pecan is of great significance. In this study, a total of 37 Aux/IAA family genes were identified in the pecan genome using bioinformatics method, subcellular localization revealed that all its members are located in the nucleus. Based on the phylogenic relationship with Arabidopsis Aux/IAAs gene, the 37 pecan Aux/IAA gene were categorized into two major groups (A and B). Multiple sequence alignment analysis showed that there were four typical conserved domains (I-IV) in Aux/IAA proteins of pecan. The cis-acting elements analysis revealed that all pecan Aux/IAAs had cis-acting elements in response to hormones in the promoter regions. According to the expression patterns of pecan Aux/IAA genes during graft healing, four genes with high expression were identified, which may play important roles in the formation of graft union in pecan. This study will be helpful to elucidate the function of pecan Aux/IAAs in the process of graft healing and find candidate genes.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.001 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.002 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".