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Record W4384024396 · doi:10.1101/2023.07.09.23292425

Single-dose effectiveness of mpox vaccine in Quebec, Canada: test-negative design with and without adjustment for self-reported exposure risk

2023· preprint· en· W4384024396 on OpenAlexaffabout
Nicholas Brousseau, Sara Carazo, Yossi Febriani, Lauriane Padet, Sandrine Hegg-Deloye, Geneviève Cadieux, Geneviève Bergeron, Judith Fafard, Hugues Charest, Gilles Lambert, Denis Talbot, Jean Longtin, Alexandre Dumont-Blais, Steve Bastien, Virginie Dalpé, Pierre-Henri Minot, Gaston De Serres, Danuta M. Skowronski

Bibliographic record

VenuemedRxiv · 2023
Typepreprint
Languageen
FieldImmunology and Microbiology
TopicPoxvirus research and outbreaks
Canadian institutionsBC Centre for Disease ControlUniversity of British ColumbiaUniversité LavalUniversité de MontréalMcGill UniversityCentre hospitalier de l'Université LavalInstitut National de Santé Publique du Québec
Fundersnot available
KeywordsMedicineLogistic regressionDemographyConfidence intervalPopulationTest (biology)VaccinationEnvironmental healthInternal medicineImmunologyBiology

Abstract

fetched live from OpenAlex

Abstract Introduction During the 2022 mpox outbreak, the province of Quebec, Canada prioritized first doses for pre-exposure vaccination of people at high mpox risk, delaying second doses due to limited supply. We estimated single-dose mpox vaccine effectiveness (VE) adjusting for virus exposure risk based only on surrogate indicators available within administrative databases (e.g. clinical record of sexually transmitted infections), or supplemented by self-reported risk factor information (e.g. sexual contacts). Methods We conducted a test-negative case-control study between June 19 and September 24, 2022. Information from administrative databases was supplemented by a questionnaire collecting self-reported risk factors specific to the three-week period before testing. Two study populations were assessed: all within the administrative databases (All-Admin) and the subset completing the questionnaire (Sub-Quest). Logistic regression models were adjusted for age, calendar-time and exposure-risk, the latter based on administrative indicators only (All-Admin and Sub-Quest populations) or supplemented by questionnaire information (Sub-Quest population). Results There were 532 All-Admin participants, of which 199 (37%) belonged to Sub-Quest. With exposure-risk adjustment based only on administrative indicators, single-dose mpox VE among All-Admin and Sub-Quest populations was similar at 35% (95%CI:-2-59) and 30% (95%CI:-38-64), respectively. With adjustment supplemented by questionnaire information, Sub-Quest VE increased to 65% (95%CI:1-87). Protection against severe outcomes was higher (VE=82%; 95%CI:-50-98) but with overlapping confidence intervals. Conclusions One vaccine dose reduced mpox risk by about two-thirds when adjustment incorporated self-reported risk factors, but by only one-third when adjustment relied solely upon administrative indicators. Inadequate adjustment for exposure risk may substantially under-estimate mpox VE.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.228
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.265
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2023
Admission routes2
Has abstractyes

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