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Record W4385762503 · doi:10.1002/tax.13017

(315–316) Proposals to clarify the role of epitypes and to further nomenclatural stability with regard to epitypes and neotypes

2023· article· en· W4385762503 on OpenAlexaff
Sergei L. Mosyakin, John McNeill

Bibliographic record

VenueTaxon · 2023
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicLichen and fungal ecology
Canadian institutionsRoyal Ontario Museum
Fundersnot available
KeywordsTaxonType (biology)NomenclatureHolotypeTypificationZoologyBiologyBotanyEcologyTaxonomy (biology)

Abstract

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The nomenclatural problems emerging from epitype designations (see Art. 9.9, also Art. 9.17, 9.20 and 9.21 of the International Code of Nomenclature for algae, fungi, and plants, the “Code”: Turland & al. in Regnum Veg. 159. 2018), especially situations when an epitype and the type it supports differ taxonomically, were recently considered and discussed in several publications (e.g. Ariyawansa & al. in Fungal Diversity 69: 57–91. 2014; Rindi & al. in Fottea (Olomouc) 17: 78–88. 2017; Mosyakin & McNeill in Phytotaxa 376: 133–137. 2018; Mosyakin & Mandák in Taxon 67: 1218–1219, 1220–1221. 2018; in Ukrayins'k. Bot. Zhurn. 77: 413–427. 2020; in Taxon 70: 206–207. 2021; Lendemer in Taxon 69: 849–850. 2020), including proposals to amend the Code (e.g. Lendemer in Taxon 69: 631. 2020; Mazumdar & al. in Taxon 69: 631. 2020; Wisnev in Taxon 70: 1382–1383. 2021; de Lírio & al. in Taxon 70: 1384. 2021; Steudel in Taxon 70: 1385–1385. 2021) and summarized by Sennikov (in Nordic J. Bot. 2022(8): e03535. 2022). However, it seems that Sennikov (l.c.) disagreed with our conclusion that “the application of a name is ultimately established by the epitype, not the lectotype (or even the holotype or neotype)” (Mosyakin & McNeill, l.c.: 134) because “this conclusion is in contradiction with the other functions of the primary types” (Sennikov, l.c.: 2). However, let us consider the logic of Art. 9.9. First, it states that an epitype serves as “an interpretative type”. Second, an epitype can be designated “when the holotype, lectotype, or previously designated neotype, or all original material associated with a validly published name, is demonstrably ambiguous and cannot be critically identified for purposes of the precise application of the name to a taxon”. Therefore an epitype, by definition, serves as the type used for taxonomic interpretation of a taxonomically ambiguous name thereby establishing the proper taxonomic application of that name. That is exactly what we stated in our article (see above). But what should be done if, after the designation of an epitype, it is demonstrated that the supported type or all original material associated with a name can “be critically identified for purposes of the precise application of the name to a taxon”? Probably in that case an epitype is no longer needed and can be simply cancelled, abandoned or disregarded? Unfortunately, that is not the case. It is supposed (or implied) in the Code (Art. 9.9) that the author who designates an epitype is certain that a type or all original material associated with a name “is demonstrably ambiguous and cannot be critically identified for purposes of the precise application of the name to a taxon”. No requirements for any specific proof of that demonstrable ambiguity is currently prescribed in the Code (see, however, Rec. 9B), but Lendemer (l.c.: 631) recently proposed to require a statement of demonstrable ambiguity for epitype designation, which we consider a useful amendment. There are also some other proposals to amend the Code (see above). However, in our opinion, more certainty might be needed in the future, in comparison with the current requirement of demonstrable ambiguity and Rec. 9B, because to one researcher a taxonomic application of a certain type can be viewed as demonstrably ambiguous, while another author may consider the same specimen not taxonomically ambiguous at all. It still remains uncertain who should be the judges in that case. Here we propose an amendment to Art. 9.20 making more explicit the conditions under which the procedure of conservation should be undertaken. The thrust of our proposal is already implicit in the current wording of Art. 9.20 requiring conservation of a type under Art. 14 to resolve any conflict between an epitype and the type it supports. The purpose of conservation is to avoid disadvantageous nomenclatural changes and to retain those names that best serve stability of nomenclature (Art. 14.1 and 14.2). We propose that Art. 9.20 make it explicit that any conflict involving an epitype is to be resolved in whatever way best serves nomenclatural stability. “9.20. The author who first designates (Art. 7.10, 7.11, and F.5.4) an epitype must be followed; a different epitype may be designated only if the original epitype is lost or destroyed (see also Art. 9.17). A lectotype or neotype supported by an epitype may be superseded in accordance with Art. 9.19 or, in the case of a neotype, in accordance with Art. 9.18. If it can be shown that an epitype and the type it supports differ taxonomically and that neither Art. 9.18 nor 9.19 applies, the name may be proposed for conservation with a conserved type if this will best serve nomenclatural stability (Art. 14.9; see also Art. 57).” In our opinion, the procedure of epitypification, as it is currently prescribed in the Code and applied now, can be dangerous for nomenclatural stability. In particular, it can be used as a tool for nomenclatural and taxonomic “resurrection” of long-forgotten and/or taxonomically obscure names that are not in current use and may compete with currently accepted names. Many of such long-forgotten and obscure names should better remain in oblivion, for the sake of nomenclatural stability. We have already stated that “At least a new Recommendation not encouraging restoration of taxonomically obscure and nomenclaturally long-forgotten names through their epitypification should be considered, especially in cases when such resurrection affects well-established and widely accepted names” (Mosyakin & McNeill, l.c.: 136). Here we propose a new Recommendation in Rec. 9B. “9B.3. Neotypes and/or epitypes should not be designated for long-forgotten and/or taxonomically obscure names that are not in current use, especially if such names may compete in terms of priority with currently accepted names.” We are grateful to Nicholas J. Turland (Botanischer Garten und Botanisches Museum Berlin, Freie Universität Berlin, Germany) and John H. Wiersema (Smithsonian Institution, Washington, D.C., U.S.A.) for their useful comments and editing.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.481
Threshold uncertainty score0.344

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.207
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2023
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