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Record W4385802385 · doi:10.1136/jmg-2022-109030

Further delineation of the rare GDACCF (global developmental delay, absent or hypoplastic corpus callosum, dysmorphic facies syndrome): genotype and phenotype of 22 patients with <i>ZNF148</i> mutations

2023· article· en· W4385802385 on OpenAlexaff
Katalin Szakszon, Charles Marques Lourenço, Bert Callewaert, David Geneviève, Flavien Rouxel, Denis Morin, Anne‐Sophie Denommé‐Pichon, Antonio Vitobello, Wesley G Patterson, Raymond J. Louie, Filippo Pinto e Vairo, Eric W. Klee, Charu Kaiwar, Ralitza H. Gavrilova, Katherine Agre, Sébastien Jacquemont, Jizi Khadijé, Jacques C. Giltay, Koen L.I. van Gassen, Gabriella Merő, Erica H. Gerkes, Bregje W.M. van Bon, Tuula Rinne, Rolph Pfundt, Han G. Brunner, Oana Caluseriu, Ute Grasshoff, Martin Kehrer, Tobias B. Haack, Melik Malek Khelifa, Anke K. Bergmann, Anna M. Cueto‐González, Ariadna Campos Martorell, Shwetha Ramachandrappa, L. Sawyer, P Fasel, Dominique Braun, Isis Atallah, Andrea Superti‐Furga, Vanda McNiven, David Chitayat, Syed Anas Ahmed, Heiko Brennenstuhl, Eva MC Schwaibolf, Gladys Battisti, Benoît Parmentier, Servi J.C. Stevens

Bibliographic record

VenueJournal of Medical Genetics · 2023
Typearticle
Languageen
FieldMedicine
TopicFetal and Pediatric Neurological Disorders
Canadian institutionsHospital for Sick ChildrenSickKids FoundationUniversity of TorontoUniversity Health NetworkUniversity of AlbertaUniversité de MontréalMount Sinai HospitalCentre Hospitalier Universitaire Sainte-Justine
Fundersnot available
KeywordsCorpus callosumPhenotypeGlobal developmental delayGeneticsBiologyGenotypeMutationGenotype-phenotype distinctionGeneAnatomy

Abstract

fetched live from OpenAlex

Background Pathogenic variants in the zinc finger protein coding genes are rare causes of intellectual disability and congenital malformations. Mutations in the ZNF148 gene causing GDACCF syndrome (global developmental delay, absent or hypoplastic corpus callosum, dysmorphic facies; MIM #617260) have been reported in five individuals so far. Methods As a result of an international collaboration using GeneMatcher Phenome Central Repository and personal communications, here we describe the clinical and molecular genetic characteristics of 22 previously unreported individuals. Results The core clinical phenotype is characterised by developmental delay particularly in the domain of speech development, postnatal growth retardation, microcephaly and facial dysmorphism. Corpus callosum abnormalities appear less frequently than suggested by previous observations. The identified mutations concerned nonsense or frameshift variants that were mainly located in the last exon of the ZNF148 gene. Heterozygous deletion including the entire ZNF148 gene was found in only one case. Most mutations occurred de novo, but were inherited from an affected parent in two families. Conclusion The GDACCF syndrome is clinically diverse, and a genotype-first approach, that is, exome sequencing is recommended for establishing a genetic diagnosis rather than a phenotype-first approach. However, the syndrome may be suspected based on some recurrent, recognisable features. Corpus callosum anomalies were not as constant as previously suggested, we therefore recommend to replace the term ‘GDACCF syndrome’ with ‘ ZNF148 -related neurodevelopmental disorder’.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.031
Threshold uncertainty score0.257

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.245
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2023
Admission routes1
Has abstractyes

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