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Record W4385984513 · doi:10.1101/2023.08.17.552973

Intracellular <i>Pseudomonas aeruginosa</i> within the airway epithelium of Cystic Fibrosis lung tissues

2023· preprint· en· W4385984513 on OpenAlexafffund
Julien Malet, Emmanuel Faure, Damien Adam, Jannik Donner, Lin Liu, Sarah-Jeanne Pilon, Richard S. Fraser, Peter Jorth, Dianne K. Newman, Emmanuelle Brochiero, Simon Rousseau, Dao Nguyen

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacterial biofilms and quorum sensing
Canadian institutionsMcGill UniversityCentre Hospitalier de l’Université de MontréalUniversité de MontréalMcGill University Health Centre
FundersCystic Fibrosis CanadaMcGill University Health Centre
KeywordsCystic fibrosisIntracellularLungPseudomonas aeruginosaRespiratory epitheliumBiologyLung transplantationIntracellular parasiteEpitheliumPathologyMicrobiologyAirwayExtracellularImmunologyBacteriaMedicineCell biologyInternal medicine

Abstract

fetched live from OpenAlex

Abstract RATIONALE Pseudomonas aeruginosa ( P.a .) is the major bacterial pathogen colonizing the airways of adult cystic fibrosis (CF) patients and causes chronic infections that persist despite antibiotic therapy. Intracellular bacteria may represent an unrecognized reservoir of bacteria that evades the immune system and antibiotic therapy. While the ability of P.a . to invade and survive within epithelial cells has been described in vitro in different epithelial cell models, evidence of this intracellular lifestyle in human lung tissues is currently lacking. OBJECTIVES To detect and characterize intracellular P.a . in CF airway epithelium from human lung explant tissues. METHODS We sampled the lung explant tissues from CF and non-CF patients undergoing lung transplantation and analyzed lung tissue sections for the presence of intracellular P.a . by quantitative culture and microscopy, in parallel to histopathology and airway morphometry. MEASUREMENTS AND MAIN RESULTS P.a . was isolated from the lungs of 7 CF patients undergoing lung transplantation. Microscopic assessment revealed the presence of intracellular P.a . within airway epithelial cells in 3 out of the 7 lungs analyzed, at a varying but rare frequency. We observed those events occurring in lung regions with high bacterial burden. CONCLUSION This is the first study describing the presence of intracellular P.a . in CF lung tissues. While intracellular P.a . in airway epithelial cells are likely relatively rare events, our findings highlight the plausible occurrence of this intracellular bacterial reservoir in chronic CF infections.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.211
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes2
Has abstractyes

Explore more

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