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Record W4386021375 · doi:10.1101/2023.08.18.23294172

Infection rate and Immune Response to SARS-CoV-2 in Canadian Retail Workers -Cohort Description

2023· preprint· en· W4386021375 on OpenAlexafffundabout
Mathieu Thériault, Kim Santerre, Nicholas Brousseau, Samuel Rochette, Joelle N. Pelletier, Caroline Gilbert, Jean‐François Masson, Mariana Baz, Denis Boudreau, Sylvie Trottier

Bibliographic record

VenuemedRxiv · 2023
Typepreprint
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsUniversité du Québec à MontréalRegroupement Québécois sur les Matériaux de PointeCentre hospitalier universitaire de QuébecInstitut National de Santé Publique du QuébecUniversité de MontréalUniversité LavalCentre hospitalier de l'Université LavalPROTEO
FundersPublic Health AgencyPublic Health Agency of Canada
KeywordsCohortMedicineVaccinationIncidence (geometry)Cohort studyPandemicSocioeconomic statusDemographyCoronavirus disease 2019 (COVID-19)Prospective cohort studyGerontologyEnvironmental healthFamily medicineImmunologyInternal medicinePopulationDisease

Abstract

fetched live from OpenAlex

ABSTRACT Retail workers are an understudied occupational group that may have been at increased risk of contracting SARS-CoV-2 during the COVID-19 pandemic. To explore this question, we set up a longitudinal cohort of participants working in this sector to document the rate of SARS-CoV-2 infection and the immune response to infection and/or vaccination. A total of 304 participants were recruited between April 20 th , 2021 and October 22 nd , 2021. They were invited to attend three visits (each separated by ∼12 weeks) during which they provided blood samples. Information was collected on participant characteristics, SARS-CoV-2 detection tests done, COVID-19 symptoms, and vaccination. An extension phase of two additional visits was carried out between March 15 th , 2022 and October 3 rd , 2022 to document the impact of the Omicron variant among the 198 participants who were still eligible for recruitment. Participants were aged 18 to 75 and worked in grocery stores, hardware stores, bars or restaurants within the Québec City metropolitan area (Canada). Findings to date: This article describes participants’ demographic, socioeconomic, behavioral, occupational and clinical characteristics, and their COVID-19 symptoms (when applicable), as well as SARS-CoV-2 vaccination status and any SARS-CoV-2 positive diagnostic test (i.e., PCR or rapid antigen) from the beginning of the pandemic until the last visit. The goals of this study were: to assess the rate of SARS-CoV-2 infection, and the immune response (innate and acquired) to SARS-CoV-2 infection or vaccination using a variety of techniques. The humoral immune response was measured by reference and experimental enzyme-linked immunosorbent assays, as well as microneutralization assays with live viruses and experimental pseudoneutralization with an angiotensin-converting enzyme 2-spike assay. Cellular immune response was evaluated by using the viral analog R848 to activate peripheral blood mononuclear cells and neutrophils.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.180
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0050.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.082
GPT teacher head0.352
Teacher spread0.270 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2023
Admission routes3
Has abstractyes

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