MétaCan
Menu
Back to cohort
Record W4386085320 · doi:10.1101/2023.08.23.554395

Effects of biological and environmental factors on orthoebolavirus serology in bats in Guinea

2023· preprint· en· W4386085320 on OpenAlexaff
Maëliss Champagne, Julien Cappelle, Alexandre Caron, Thibault Pouliquen, Aboubacar Samoura, Mohamed Idriss Doumbouya, Guillaume Thaurignac, Ahidjo Ayouba, Alpha Kabinet Kéita, Martine Peeters, Mathieu Bourgarel, Hélène De Nys

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldMedicine
TopicViral Infections and Outbreaks Research
Canadian institutionsMinistère des Ressources naturelles et des Forêts
FundersEuropean Commission
KeywordsBiologySerologyZoologyVirologyAntibodyEcologyImmunology

Abstract

fetched live from OpenAlex

Abstract Background Outbreaks of Ebola disease emerge regularly in human populations on the African continent. This highly virulent haemorrhagic fever can be caused by different orthoebolaviruses from the Filoviridae family. Several bat species are believed to carry and transmit some of these viruses to people or other animal species. However, clear evidence is still lacking. Natural circulation and zoonotic transmissions of viruses are generally complex as they often involve several host species and are influenced by biological, environmental and anthropogenic factors. A better understanding of the role of bats and other wildlife in the emergence of Ebola disease outbreaks is crucial for their prevention and early detection. Methods In this longitudinal study we searched for antibodies against orthoebolaviruses in fruit bats in order to explore some of the factors which might influence their natural circulation. We performed serological tests on populations of 4 bat species ( Eidolon helvum , Hypsignathus monstrosus , Myonycteris angolensis and Rousettus aegyptiacus ) sampled longitudinally for 18 months (2018-2020) in Guinea. The analysis of 1,427 bat samples for antibodies directed against different orthoebolavirus species allowed us to test the influence of biological and environmental variables on seropositivity by using GLMM. Results Results showed that the presence of antibodies against one of the orthoebolaviruses antigen is more frequent in the Eidolon helvum and Rousettus aegyptiacus species, in males, in sexually immature adults, and during the dry season. Conclusion Our results suggest that host species, sex, age, reproductive life-cycle and season may play an important role in the circulation of filoviruses. This information can be used to guide further sampling to specifically characterize the orthoebolavirus species underlying the production of these antibodies and to adjust surveillance protocols at the interface between bats, humans and other animals.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.276
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicViral Infections and Outbreaks ResearchFrench-language works237,207