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Record W4386117018 · doi:10.1172/jci170341

Endogenous adenine mediates kidney injury in diabetic models and predicts diabetic kidney disease in patients

2023· article· en· W4386117018 on OpenAlexaff
Kumar Sharma, Guanshi Zhang, Jens Hansen, Petter Bjornstad, Hak Joo Lee, Rajasree Menon, Leila Hejazi, Jianjun Liu, Anthony J. Franzone, Helen C. Looker, Byeong Yeob Choi, Roman Fernandez, Manjeri A. Venkatachalam, Luxcia Kugathasan, Vikas S. Sridhar, Loki Natarajan, Varun Sharma, Brian Kwan, Sushrut S. Waikar, Jonathan Himmelfarb, Katherine R. Tuttle, Bryan Kestenbaum, Tobias Fuhrer, Harold I. Feldman, Ian H. de Boer, Fábio C. Tucci, John R. Sedor, Hiddo J.L. Heerspink, Jennifer A. Schaub, Edgar A. Otto, Jeffrey B. Hodgin, Matthias Kretzler, Christopher Anderton, Theodore Alexandrov, David Z.I. Cherney, Su Chi Lim, Robert G. Nelson, Jonathan Gelfond

Bibliographic record

VenueJournal of Clinical Investigation · 2023
Typearticle
Languageen
FieldMedicine
TopicChronic Kidney Disease and Diabetes
Canadian institutionsUniversity Health Network
FundersNational Institute on Minority Health and Health DisparitiesNational Center for Advancing Translational SciencesNational Institute of General Medical SciencesNational Heart, Lung, and Blood InstituteNational Center for Research ResourcesNational Institute of Allergy and Infectious DiseasesClinical and Translational Science Collaborative of Cleveland, School of Medicine, Case Western Reserve UniversityUniversity of Texas Health Science Center at San AntonioPerelman School of Medicine, University of PennsylvaniaCenters for Disease Control and PreventionNational Institutes of HealthGeorge Institute for Global HealthIdorsia PharmaceuticalsUniversity of PennsylvaniaNovo NordiskBristol-Myers SquibbCleveland ClinicRijksuniversiteit GroningenMaze TherapeuticsUniversity of California, San FranciscoHorizon PharmaDeutsches KrebsforschungszentrumJohns Hopkins UniversityEidgenössische Technische Hochschule ZürichNational University of SingaporeLee Kong Chian School of Medicine, Nanyang Technological UniversityMichigan Institute for Clinical and Health ResearchEli Lilly and CompanyKaiser PermanenteGeorgia Clinical and Translational Science AllianceGilead SciencesBoettcher FoundationPacific Northwest National LaboratoryUniversitair Medisch Centrum GroningenUniversity of Colorado School of Medicine, Anschutz Medical CampusUniversity of Illinois at Urbana-ChampaignEuropean Molecular Biology LaboratoryCSL BehringAstraZenecaNational Institute of Diabetes and Digestive and Kidney DiseasesSanofiAmerican Heart AssociationAmerican Diabetes Association
KeywordsMedicineKidney diseaseAlbuminuriaDiabetes mellitusDiabetic nephropathyKidneyInternal medicineEndocrinologyRenal functionBiomarkerMicroalbuminuriaPI3K/AKT/mTOR pathwayBiologyApoptosis

Abstract

fetched live from OpenAlex

Diabetic kidney disease (DKD) can lead to end-stage kidney disease (ESKD) and mortality; however, few mechanistic biomarkers are available for high-risk patients, especially those without macroalbuminuria. Urine from participants with diabetes from the Chronic Renal Insufficiency Cohort (CRIC) study, the Singapore Study of Macro-angiopathy and Micro-vascular Reactivity in Type 2 Diabetes (SMART2D), and the American Indian Study determined whether urine adenine/creatinine ratio (UAdCR) could be a mechanistic biomarker for ESKD. ESKD and mortality were associated with the highest UAdCR tertile in the CRIC study and SMART2D. ESKD was associated with the highest UAdCR tertile in patients without macroalbuminuria in the CRIC study, SMART2D, and the American Indian study. Empagliflozin lowered UAdCR in nonmacroalbuminuric participants. Spatial metabolomics localized adenine to kidney pathology, and single-cell transcriptomics identified ribonucleoprotein biogenesis as a top pathway in proximal tubules of patients without macroalbuminuria, implicating mTOR. Adenine stimulated matrix in tubular cells via mTOR and stimulated mTOR in mouse kidneys. A specific inhibitor of adenine production was found to reduce kidney hypertrophy and kidney injury in diabetic mice. We propose that endogenous adenine may be a causative factor in DKD.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.060
GPT teacher head0.329
Teacher spread0.268 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations60
Published2023
Admission routes1
Has abstractyes

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