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Record W4386427389 · doi:10.1002/ndr2.12210

First report of an aggressive species of <i>Neopestalotiopsis</i> affecting strawberry in Canada

2023· article· en· W4386427389 on OpenAlexafffundabout
Joann McNally, Komathy Prapagar, Katelyn E. Goldenhar, Erica Pate, Shihua Shan, Melanie Kalischuk

Bibliographic record

VenueNew Disease Reports · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsMinistry of Agriculture, Food and Rural AffairsUniversity of Guelph
FundersMinistry of Agriculture, Food and Rural AffairsOntario Ministry of Agriculture, Food and Rural Affairs
KeywordsConidiumBiologyPotato dextrose agarMyceliumBotanyInoculationHorticultureAgarSpots

Abstract

fetched live from OpenAlex

In October 2020, Pestalotiopsis-like disease symptoms were observed in a one-acre field of strawberry (Fragaria × ananassa cv. Albion) located in Ontario, Canada. Symptoms appeared as light brown necrotic lesions surrounded by darker red-brown haloes on leaves, black fruiting bodies, and wilt. Disease incidence in the field was 40% and a further 5% of the plants were dead (Figure 1, 2 & 3). One lesion was isolated from the crown tissue of six actively collapsing plants. Lesions were sterilized with 0.5% sodium hypochlorite for one minute, rinsed twice for five minutes in 50 ml sterile water, and placed on 1.5% water agar. Following two days of incubation at 24°C, single hyphal tips were transferred to potato dextrose agar and incubated at 24°C for seven days. Fungi were isolated from four of the six plants. Cultures had a white, cottony mycelium upper surface and a white to pale orange lower surface. Black viscous acervuli appeared on the upper surface of the colonies before day 14. Conidia were five-celled, fusiform to ellipsoid and 23.0-25.1 μm long and 7.2-7.4 μm wide (n = 30). DNA was extracted from seven-day old cultures and the internal transcribed spacer (ITS) region, β-tubulin, and translation elongation factor 1-alpha were amplified using PCR (Maharachchikumbura et al., 2014). Amplified products were sequenced in both directions and sequences deposited in GenBank (Accession Nos. OQ731784, OQ731785 and OR002051, respectively). Amplified products from all four cultures shared 100% nucleotide identity. The genomic sequence data shared 100% nucleotide identity with the aggressive Neopestalotiopsis species that was first reported in North America (Baggio et al., 2021). Sequence identities include 375/375 bp for the ITS, 381/381 bp β-tubulin, and 588/588 bp for the translation elongation factor 1-alpha. To fulfill Koch's postulates, three four-week-old strawberry cv. Montana plants were spray inoculated until run-off with 1×104 conidia/ml from the fungus isolated from a crown sample or sterile distilled water. Spore suspensions were obtained from seven-ten-day old colonies and all experiments were repeated three times. Experimental plants were grown under controlled environmental conditions at 85% humidity, 12 hour photoperiod of 24°C day/22°C night and light levels of 100μE.m2s−1. After 5–14 days following inoculation, all of the plants inoculated with the fungus exhibited foliar lesions and fruiting bodies with conidia (Figure 4). Plants sprayed with sterile distilled water did not show any symptoms. Fungi were re-isolated from a single spore in all plants inoculated with fungi but not from those plants sprayed with sterile distilled water. DNA was extracted from the re-isolated fungi and subject to PCR amplification and sequencing, as described above. The DNA sequence from all three loci had 100% sequence identity to the original ITS, β-tubulin, and translation elongation factor 1-alpha loci. This is the first time that the aggressive species of Neopestalotiopsis, previously reported in the United States (Baggio et al., 2021; Rotondo et al., 2022; Guan et al., 2023) has been reported in Canada. We thank the Berry Growers of Ontario and Ontario Ministry of Agriculture, Food and Rural Affairs for supporting this work.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Case report · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.122
Threshold uncertainty score0.245

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0050.001
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.223
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designCase report
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2023
Admission routes3
Has abstractyes

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