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Record W4386791193 · doi:10.1101/2023.09.11.557127

Discovery of a functionally selective serotonin 5-HT <sub>1A</sub> receptor agonist for the treatment of pain

2023· preprint· en· W4386791193 on OpenAlexfundno aff
Annika Ullrich, Johannes Schneider, João M. Bráz, Eduard Neu, Nico Staffen, Markus Stanek, Jana Bláhová, Tamsanqa Hove, Tamara Albert, Anni Allikalt, Stefan Löber, Karnika Bhardwaj, Sian Rodriguez-Rosado, Elissa A. Fink, Tim Rasmussen, Harald Hübner, Asuka Inoue, Brian K. Shoichet, Allan J. Basbaum, Bettina Böttcher, Dorothée Weikert, Peter Gmeiner

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicReceptor Mechanisms and Signaling
Canadian institutionsnot available
FundersJulius-Maximilians-Universität WürzburgDeutsche ForschungsgemeinschaftUniversité de MontréalStudienstiftung des Deutschen VolkesBoehringer Ingelheim StiftungEuropean CommissionJapan Society for the Promotion of ScienceVerband der Chemischen Industrie
KeywordsAgonistG protein-coupled receptorSerotonin5-HT receptorFunctional selectivityChemistryReceptorPharmacologyPartial agonistNeuroscienceMedicineBiologyBiochemistry

Abstract

fetched live from OpenAlex

Abstract The G protein-coupled serotonin receptor 5-HT 1A R mediates antinociception and may serve as a valuable target for the treatment of pain. Starting from a chemical library, ST171, a bitopic chemotype activating 5-HT 1A R was evolved. In vitro pharmacological investigations of ST171 revealed potent and selective G i activation (EC 50 = 0.3 nM), with marginal G s and β-arrestin recruitment. Preclinical studies in mice showed that ST171 was effective in acute and chronic (inflammatory and neuropathic) pain models, without causing sedation. Comparison of cryo-EM structures of a 5-HT 1A R-G i complex bound to the functionally biased agonist ST171, with a structure bound to the functionally balanced agonist befiradol, showed that both ligands bind to the same orthosteric site, but address different exo-sites. The individual poses are associated with ligand-specific helical dispositions and rearrangements of microdomains. Complementation of these studies with molecular dynamics simulations allowed us to derive structural features associated with ST171’s functional selectivity, a phenomenon that may be crucial to the discovery of more effective and safe GPCR drugs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.222
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2023
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicReceptor Mechanisms and SignalingFrench-language works237,207