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Record W4387298120 · doi:10.1101/2023.10.01.23296379

Mapping the aetiological foundations of the heart failure spectrum using human genetics

2023· preprint· en· W4387298120 on OpenAlexaff
Albert Henry, Xiaodong Mo, Chris Finan, Mark Chaffin, Doug Speed, Hanane Issa, Spiros Denaxas, James S. Ware, Sean L. Zheng, Anders Mälarstig, Jasmine Gratton, Isabelle Bond, Carolina Roselli, D.J. Miller, Sandesh Chopade, Amand F. Schmidt, Erik Abner, Lance Adams, Charlotte Andersson, Krishna G. Aragam, Johan Ärnlöv, Géraldine Asselin, Anna Axelsson Raja, Joshua Backman, Traci M. Bartz, Kiran J. Biddinger, Mary L. Biggs, Heather L. Bloom, Eric Boersma, Jeffrey Brandimarto, Michael R. Brown, Søren Brunak, Mie Topholm Bruun, Leonard Buckbinder, Henning Bundgaard, David J. Carey, Daniel I. Chasman, Xing Chen, James P. Cook, Tomasz Czuba, Simon de Denus, Abbas Dehghan, Graciela E. Delgado, Alex S. F. Doney, Marcus Dörr, Joseph Dowsett, Samuel C. Dudley, Gunnar Engström, Christian Erikstrup, Tõnu Esko, Eric Farber‐Eger, Stephan B. Felix, Sarah Finer, Ian Ford, Mohsen Ghanbari, Sahar Ghasemi, Jonas Ghouse, Vilmantas Giedraitis, Franco Giulianini, John S. Gottdiener, Stefan Groß, Daníel F. Guðbjartsson, Hongsheng Gui, Rebecca Gutmann, Sara Hägg, Christopher M. Haggerty, Åsa K. Hedman, Anna Helgadóttir, Harry Hemingway, Hans L. Hillege, Craig Hyde, Bitten Aagaard, J. Wouter Jukema, Isabella Kardys, Ravi Karra, Maryam Kavousi, Jorge R. Kizer, Marcus E. Kleber, Lars Køber, Andrea Koekemoer, Karoline Kuchenbaecker, Yi-Pin Lai, David E. Lanfear, Claudia Langenberg, Honghuang Lin, Lars Lind, Cecilia M. Lindgren, Peter P. Liu, Barry London, Brandon D. Lowery, Jian’an Luan, Steven A. Lubitz, Patrik K. E. Magnusson, Kenneth B. Margulies, Nicholas Marston, Hilary C. Martin, Winfried März, Olle Melander, Ify Mordi, Michael P. Morley, Andrew P. Morris, Alanna C. Morrison, Lori Morton, Michael W. Nagle, Christopher P. Nelson, Alexander Niessner, Teemu Niiranen, Raymond Noordam, Christoph Nowak, Michelle L. O’Donoghue, Sisse Rye Ostrowski, Anjali Owens, Guillaume Paré, Ole Birger Pedersen, Markus Perola, Marie Pigeyre, Bruce M. Psaty, Kenneth Rice, Paul M. Ridker, Simon P.R. Romaine, Jerome I. Rotter, Christian T. Ruff, Mark S. Sabatine, Neneh Sallah, Veikko Salomaa, Naveed Sattar, Alaa Shalaby, Akshay Shekhar, Diane T. Smelser, Nicholas L. Smith, Erik Sørensen, Sundararajan Srinivasan, Kāri Stefánsson, Garðar Sveinbjörnsson, Per Svensson, Mari‐Liis Tammesoo, Jean‐Claude Tardif, Maris Teder‐Laving, Alexander Teumer, Guðmundur Þorgeirsson, Unnur Þorsteinsdóttir, Christian Torp‐Pedersen, Vinicius Tragante, Stella Trompet, André G. Uitterlinden, Henrik Ullum, Pim van der Harst, David A. van Heel, Jessica van Setten, Marion van Vugt, Abirami Veluchamy, Monique Verschuuren, Niek Verweij, Christoffer Rasmus Vissing, Uwe Völker, Adriaan A. Voors, Lars Wallentin, Yunzhang Wang, Peter Weeke, Kerri L. Wiggins, L. Keoki Williams, Yifan Yang, Bing Yu, Faı̈ez Zannad, Chaoqun Zheng, Folkert W. Asselbergs, Thomas P. Cappola, Marie‐Pierre Dubé, Michael E. Dunn, Chim C. Lang, Nilesh J. Samani, Svati H. Shah, Ramachandran S. Vasan, J. G. Smith, Hilma Hólm, Sonia Shah, Patrick T. Ellinor, Aroon D. Hingorani, Quinn S. Wells, R Thomas Lumbers

Bibliographic record

VenuemedRxiv · 2023
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsMcMaster UniversityUniversity of OttawaThrombosis and Atherosclerosis Research InstitutePopulation Health Research InstituteUniversité de MontréalMontreal Heart Institute
FundersMedical Research CouncilBritish Heart Foundation
KeywordsHeart failure with preserved ejection fractionHeart failureEjection fractionGenome-wide association studyConfoundingEtiologyDiseasePopulationProteostasisBiologyBioinformaticsMedicineGeneticsInternal medicineSingle-nucleotide polymorphismGeneGenotype

Abstract

fetched live from OpenAlex

Summary paragraph Heart failure (HF), a syndrome of symptomatic fluid overload due to cardiac dysfunction, is the most rapidly growing cardiovascular disorder. Despite recent advances, mortality and morbidity remain high and treatment innovation is challenged by limited understanding of aetiology in relation to disease subtypes. Here we harness the de-confounding properties of genetic variation to map causal biology underlying the HF phenotypic spectrum, to inform the development of more effective treatments. We report a genetic association analysis in 1.9 million ancestrally diverse individuals, including 153,174 cases of HF; 44,012 of non-ischaemic HF; 5,406 cases of non-ischaemic HF with reduced ejection fraction (HFrEF); and 3,841 cases of non-ischaemic HF with preserved ejection fraction (HFpEF). We identify 66 genetic susceptibility loci across HF subtypes, 37 of which have not previously been reported. We map the aetiologic contribution of risk factor traits and diseases as well as newly identified effector genes for HF, demonstrating differential risk factor effects on disease subtypes. Our findings highlight the importance of extra-cardiac tissues in HF, particularly the kidney and the vasculature in HFpEF. Pathways of cellular senescence and proteostasis are notably uncovered, including IGFBP7 as an effector gene for HFpEF. Using population approaches causally anchored in human genetics, we provide fundamental new insights into the aetiology of heart failure subtypes that may inform new approaches to prevention and treatment.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.001
Science and technology studies0.0000.001
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.089
GPT teacher head0.324
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2023
Admission routes1
Has abstractyes

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