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Record W4387569702 · doi:10.1183/13993003.00925-2023

Long-term outcomes of the global tuberculosis and COVID-19 co-infection cohort

2023· article· en· W4387569702 on OpenAlexfundno aff
Nicolás Casco, Alberto Levi Jorge, Domingo Palmero, Jan‐Willem C. Alffenaar, Greg J. Fox, Wafaa Ezz, Jin‐Gun Cho, Justin T. Denholm, Alena Skrahina, Varvara Solodovnikova, Marcos Abdo Arbex, Tatiana Alves, Marcelo Fouad Rabahi, Giovana Rodrigues Pereira, Roberta Sales, Denise Rossato Silva, Muntasir Saffie, Nadia Escobar Salinas, Ruth Caamaño Miranda, Catalina Cisterna, Clorinda Concha, Israel Fernandez, Claudia Villalón, Carolina Guajardo Vera, Patricia Gallegos Tapia, Viviana Cancino, Monica Carbonell, Arturo Jiménez Cruz, Eduardo Muñóz, Camila Muñoz, Indira Navarro, Rolando Pizarro, Gloria Pereira Cristina Sánchez, Maria Soledad Vergara Riquelme, Evelyn Vilca, Aline Soto, Ximena Figueroa Flores, Ana Garavagno, Martina Hartwig Bahamondes, L. Merino, Ana María Pradenas, Macarena Espinoza Revillot, Patricia Rodríguez, Angeles Serrano Salinas, Carolina Taiba, Joaquín Farías Valdés, Jorge Navarro Subiabre, Carlos Ortega, Sofia Palma, Patricia Perez Castillo, Mónica Pinto, Francisco Rivas Bidegain, Margarita Venegas, Edith Yucra, Yang Li, Andres Cruz, Beatriz Guelvez, Regina Victoria Plaza, Kelly Yoana Tello Hoyos, José Landivar, Martin van den Boom, Claire Andréjak, F.–X. Blanc, Samir Dourmane, Antoine Froissart, A. Izadifar, F. Rivière, F. Schlemmer, Κaterina Manika, Boubacar Diallo, Souleymane Hassane-Harouna, Norma Artiles, Licenciada Andrea Mejia, Nitesh Gupta, Pranav Ish, Gyanshankar Mishra, Jigneshkumar M. Patel, Rupak Singla, Zarir Udwadia, Francesca Alladio, Fabio Angeli, Andrea Calcagno, Rosella Centis, Luigi Ruffo Codecasa, Angelo De Lauretis, Susanna Esposito, Beatrice Formenti, Alberto Gaviraghi, Vania Giacomet, Delia Goletti, Gina Gualano, Alberto Matteelli, Giovanni Battista Migliori, Ilaria Motta, Fabrizio Palmieri, Emanuele Pontali, Tullio Prestileo, Niccolò Riccardi, Laura Saderi, Matteo Saporiti, Giovanni Sotgiu, Antonio Spanevello, Claudia Stochino, Marina Tadolini, Alessandro Torre, Simone Villa, Dina Visca, Xhevat Kurhasani, Mohammed Furjani, Najia Rasheed, Edvardas Danila, Saulius Diktanas, Ruy López‐Ridaura, Fátima Leticia Luna López, Marcela Muñoz Torrico, Adrián Rendón, Onno W. Akkerman, Seif Al-Abri, Fatma Alyaquobi, Khalsa Al-Thohli, Sarita Aguirre, Rosarito Coronel Teixeira, Viviana de Egea, Sandra Irala, Angélica Medina, Guillermo Sequera, Natalia Sosa, Fátima Vázquez, Félix Llanos-Tejada, Selene Manga, Renzo Villanueva-Villegas, David Araújo, Raquel DuarteTânia Sales Marques, Adriana Socaci, O.N. Barkanova, Maria Bogorodskaya, Sergey M. Borisov, Andrei Mariandyshev, Anna Kaluzhenina, Tatjana Adzić Vukicevic, Maja Stošić, Darius Beh, Deborah HL Ng, Ong C, Ivan Solovič, Keertan Dheda, Phindile Gina, José A. Caminero, María Luiza de Souza-Galvão, Ángel Domínguez-Castellano, José-María García-García, Israel Molina Pinargote, Sarai Quirós Fernandez, Adrián Sánchez‐Montalvá, Eva Tabernero Huguet, Miguel Zabaleta Murguiondo, Pierre‐Alexandre Bart, Jesica Mazza‐Stalder, Lia D’Ambrosio, Phalin Kamolwat, Freya Bakko, James Barnacle, Sophie Bird, Annabel Brown, Shruthi Chandran, Kieran Killington, Kathy Man, Padmasayee Papineni, Flora Ritchie, Simon Tiberi, Natasa Utjesanovic, Dominik Zenner, Jasie Hearn, Scott K. Heysell, Laura Young

Bibliographic record

VenueEuropean Respiratory Journal · 2023
Typearticle
Languageen
FieldMedicine
TopicTuberculosis Research and Epidemiology
Canadian institutionsnot available
FundersInstitute of Infection and ImmunityNIH Clinical CenterFaculty of Medicine and Health, University of SydneyBarts and The London School of Medicine and DentistryUniversitat Autònoma de BarcelonaHuashan HospitalLondon School of Hygiene and Tropical MedicineUniversidade do PortoBarts Health NHS TrustFundació Institut de Recerca Hospital Universitari Vall d’HebronNational University Health SystemRadboud Universitair Medisch CentrumInstitute of Nuclear Energy ResearchSociété de Pneumologie de Langue FrançaiseMinisterio de Salud y Protección SocialUniversitair Medisch Centrum GroningenUniversité de LausanneInstitute for Health Innovation and Technology, National University of SingaporeMcMaster UniversityFudan UniversityUniversity of Cape TownCentre Hospitalier Universitaire VaudoisInstituto De Saúde Pública, Universidade do PortoInstituto de Salud Carlos IIINational University of SingaporeSociedad Española de Neumología y Cirugía TorácicaRadboud UniversiteitUniversity College LondonUniversity of SydneyUniversidad del CaucaUniversidade Federal do Rio Grande do SulRijksuniversiteit GroningenUniversidade Federal de GoiásVirginia Department of HealthI.M. Sechenov First Moscow State Medical UniversityQueen Mary University of LondonUniversidad de CuencaUniversidad Católica de Cuenca
KeywordsMedicineHazard ratioTuberculosisProportional hazards modelCohortCoronavirus disease 2019 (COVID-19)Internal medicineCohort studySurvival analysisRetrospective cohort studyMortality rateDiseaseConfidence intervalInfectious disease (medical specialty)Pathology

Abstract

fetched live from OpenAlex

BACKGROUND: Longitudinal cohort data of patients with tuberculosis (TB) and coronavirus disease 2019 (COVID-19) are lacking. In our global study, we describe long-term outcomes of patients affected by TB and COVID-19. METHODS: We collected data from 174 centres in 31 countries on all patients affected by COVID-19 and TB between 1 March 2020 and 30 September 2022. Patients were followed-up until cure, death or end of cohort time. All patients had TB and COVID-19; for analysis purposes, deaths were attributed to TB, COVID-19 or both. Survival analysis was performed using Cox proportional risk-regression models, and the log-rank test was used to compare survival and mortality attributed to TB, COVID-19 or both. RESULTS: those dying because of either TB or COVID-19 alone (p<0.001). Significant adjusted risk factors for TB mortality were higher age (hazard ratio (HR) 1.05, 95% CI 1.03-1.07), HIV infection (HR 2.29, 95% CI 1.02-5.16) and invasive ventilation (HR 4.28, 95% CI 2.34-7.83). For COVID-19 mortality, the adjusted risks were higher age (HR 1.03, 95% CI 1.02-1.04), male sex (HR 2.21, 95% CI 1.24-3.91), oxygen requirement (HR 7.93, 95% CI 3.44-18.26) and invasive ventilation (HR 2.19, 95% CI 1.36-3.53). CONCLUSIONS: In our global cohort, death was the outcome in >10% of patients with TB and COVID-19. A range of demographic and clinical predictors are associated with adverse outcomes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0000.002
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.078
GPT teacher head0.397
Teacher spread0.319 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations32
Published2023
Admission routes1
Has abstractyes

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