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Record W4387704276 · doi:10.32942/x2wk6t

Multinational evaluation of genetic diversity indicators for the Kunming-Montreal Global Biodiversity Monitoring framework

2023· preprint· en· W4387704276 on OpenAlexaboutno aff
Alicia Mastretta‐Yanes, Jessica M. da Silva, Catherine E. Grueber, Luis Castillo‐Reina, Viktoria Köppä, Brenna R. Forester, William H. Funk, Myriam Heuertz, Fumiko Ishihama, Rebecca Jordan, Joachim Mergeay, Ivan Paz‐Vinas, Víctor J. Rincón-Parra, Maria Rodriguez‐Morales, Libertad Arredondo‐Amezcua, Gaëlle Brahy, Matt DeSaix, Lily F. Durkee, Ashley Hamilton, Austin Koontz, Iris Lang, M C Latorre, Tanya Latty, Alexander Llanes‐Quevedo, Anna J. MacDonald, Meg Mahoney, Caitlin V. Miller, Juan Francisco Ornelas, Santiago Ramírez‐Barahona, Erica Robertson, Isa‐Rita M. Russo, Metztli Arcila Santiago, Robyn E. Shaw, Glenn M. Shea, Per Sjögren‐Gulve, Emma Spence, Taylor Stack, Sofia Suárez, A. Takénaka, Henrik Thurfjell, Sheela P. Turbek, Marlien van der Merwe, Fleur Visser, Ana Wegier, Georgina Wood, Eugenia Zarza, Linda Laikre, Sean Hoban

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsnot available
FundersU.S. Geological SurveySvenska Forskningsrådet FormasAgence Nationale de la RechercheFordham University
KeywordsBiodiversityConvention on Biological DiversityTaxonGenetic diversityHeadlineGeographyEcologyPopulationDiversity (politics)Indicator valueBiologyDemographyPolitical scienceBusiness

Abstract

fetched live from OpenAlex

In December 2022, the United Nations Convention on Biological Diversity (CBD) adopted the Kunming-Montreal Global Biodiversity Framework, in which 196 Parties, for the first time, committed to report on the status of genetic diversity for all species. To facilitate this reporting, three genetic diversity indicators were developed, two of which focus on the processes contributing to genetic diversity loss: the loss of genetically distinct populations (measured by complementary indicator “proportion of populations maintained within species”) and populations being too small to maintain genetic diversity (measured by headline indicator A4, “The proportion of populations within species with an effective population size > 500”). The major advantage of these indicators is that they can be estimated without DNA-based data. However, demonstrating the feasibility of this approach to all Parties for their national reporting, requires addressing methodological challenges of using empirical data gathered from diverse sources, across diverse taxonomic groups and for countries of varying socio-economic status and biodiversity levels. Here, we assess the genetic indicators for 919 taxa, representing 5,271 populations across nine countries, including megadiverse and developing economies. Data were available to calculate indicators for each country and taxonomic group (765 taxa [83%] had data for at least one indicator). Additionally, 41% of taxa (n=518) have lost at least one-tenth of their populations (complementary indicator [populations maintained] value < 0.9), while 58% of taxa (n=568) have all populations too small to sustain genetic diversity (headline indicator [Ne 500] value = 0). By comparing taxon indicator values to their GlobalRed List status, range size, and other factors, we found the loss of genetic diversity shown by these indicators would go unnoticed by other biodiversity assessments, highlighting the critical importance of monitoring and conserving genetic diversity using these indicators.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.127
metaresearch head score (Gemma)0.144
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.623
Threshold uncertainty score0.758

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1270.144
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0080.012
Science and technology studies0.0010.001
Scholarly communication0.0050.003
Open science0.0050.004
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.052
GPT teacher head0.316
Teacher spread0.264 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2023
Admission routes1
Has abstractyes

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