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A cross-sectional audit and survey of Open Science and Data Sharing practices at The Montreal Neurological Institute-Hospital

2023· preprint· en· W4387736754 on OpenAlexafffundabout
Sanam Ebrahimzadeh, Kelly D. Cobey, Justin Presseau, Mohsen Alayche, Jessie V. Willis, David Moher

Bibliographic record

VenueF1000Research · 2023
Typepreprint
Languageen
FieldEnvironmental Science
TopicHealth, Environment, Cognitive Aging
Canadian institutionsUniversity of OttawaOttawa Hospital
FundersMontreal Neurological Institute and Hospital
KeywordsOpen scienceAuditOpen dataData sharingTransparency (behavior)MedicinePsychologyLibrary sciencePolitical scienceAlternative medicineBusinessWorld Wide WebComputer sciencePhysicsAccountingPathology

Abstract

fetched live from OpenAlex

Background: Open science is a movement and set of practices to conduct research more transparently. The adoption of open science has been recognized to support innovation, equity, and transparency. The Montreal Neurological Institute-Hospital (Neuro) has committed to becoming an ‘open science’ institute, the first of its kind in Canada. Here we report on an audit of open data practices in Neuro publications and on a survey of Neuro-based researchers’ barriers and facilitators to data sharing. Methods: In the first study, we retrieved 313 unique publications and collated all Neuro publications from 2019 and extracted information from each article pertaining to data sharing and other open science practices. We included all empirical papers and pre-prints that were reported in English. In the second study, one hundred twenty-four participants (out of 553) completed the survey, with a response rate of 22.42%. We surveyed all Neuro researchers. For the audit, we examined data sharing and open science practices. For the survey, we asked participants questions about their data sharing practices and perceptions. Results: We found that 66.5% of these publications (n=208) included a data sharing statement. Overall, 74.5% (n=155) of articles had data that was publicly available. When examining broader open science practices, rates of compliance tended to be lower. For example, 94.9% (n=297) of publications failed to register a protocol. Among participants who had published a first or last authored paper in the past year, most participants, 53 of 74 (71.62%), reported that they had openly shared their research data. Less than half of the participants, 37.50% (n=45), reported having engaged in training related to data sharing within the last 12 months. Conclusion: We found that half of all publications included in the audit shared data. Participants indicated an appetite for resources for learning about data-sharing signaling a willingness to perform better.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.039
metaresearch head score (Gemma)0.115
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Open science
Consensus categoriesnone
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.998
Threshold uncertainty score0.681

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0390.115
Meta-epidemiology (narrow)0.0000.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0060.013
Science and technology studies0.0040.003
Scholarly communication0.0040.004
Open science0.0020.004
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.363
GPT teacher head0.484
Teacher spread0.121 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designObservational
DomainReproducibility
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2023
Admission routes3
Has abstractyes

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