MétaCan
Menu
Back to cohort
Record W4387736865 · doi:10.1101/2023.10.13.23296991

Automated and Interpretable Detection of Hippocampal Sclerosis in temporal lobe epilepsy: AID-HS

2023· preprint· en· W4387736865 on OpenAlexaff
Mathilde Ripart, Jordan DeKraker, Maria H. Eriksson, Rory J. Piper, Jiajie Mo, Ting‐Yu Su, Ryuzaburo Kochi, Irène Wang, Gavin P. Winston, Chris A. Clark, Felice D’Arco, Kshitij Mankad, Ali R. Khan, Torsten Baldeweg, Sophie Adler, Konrad Wagstyl

Bibliographic record

VenuemedRxiv · 2023
Typepreprint
Languageen
FieldMedicine
TopicEpilepsy research and treatment
Canadian institutionsWestern UniversityQueen's UniversityMcGill University
FundersMedical Research CouncilRosetrees TrustEpilepsy Research UK
KeywordsHippocampal sclerosisTemporal lobeEpilepsyHippocampal formationCohortMedicineLogistic regressionCortical dysplasiaMagnetic resonance imagingRadiologyPathologyPsychologyNeuroscienceInternal medicine

Abstract

fetched live from OpenAlex

Abstract Hippocampal Sclerosis (HS) can elude visual detection on MRI scans of patients with temporal lobe epilepsy (TLE), causing delays in surgical treatment and reducing the likelihood of postsurgical seizure-freedom. We developed an open-source software that (1) detects HS from structural MRI scans, (2) generalises across a heterogeneous multicentre cohort of children and adults, and (3) generates individualised predictions for clinical evaluation. We included a cohort of 363 participants (152 patients with HS, 90 disease controls with focal cortical dysplasia, and 121 healthy controls) from four epilepsy centres in the UK, North America, and China. We used the open-source software HippUnfold to extract morphological surface-based features and volumes of the hippocampus from T1w MRI scans. We compared pathological hippocampal morphology in patients with HS to normative growth charts generated from healthy controls, and to the contralateral hippocampi in patients with HS. HS was characterised by decreased volume, thickness and gyrification as well as increased mean and intrinsic curvature. A logistic regression classifier trained on these features detected 90.1% of HS patients, and accurately lateralised 97.4% of the HS cohort. Crucially, in patients with MRI-negative histopathologically confirmed HS, the classifier detected HS in 79.2% (19/24) and accurately lateralised the lesions in 91.7% (22/24). The Automated and Interpretable Detection of Hippocampal Sclerosis classifier (AID-HS) was packaged into an open-source pipeline, which detects and lateralises HS and generates individualised patient reports that characterise hippocampal developmental abnormalities. AID-HS is capable of accurately detecting and lateralising HS in a large, heterogeneous, multi-centre, cohort of paediatric and adult patients with diagnostically challenging HS. Moreover, by offering transparent, robust and interpretable results, AID-HS can support the presurgical evaluation of patients with suspected TLE.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.049
GPT teacher head0.315
Teacher spread0.266 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2023
Admission routes1
Has abstractyes

Explore more

Same venuemedRxivSame topicEpilepsy research and treatmentFrench-language works237,207