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Epithelial to mesenchymal transition (EMT) changes in patients with non-small cell lung cancer (NSCLC)

2023· article· en· W4387979632 on OpenAlexaff
Wenying Lu, Collin Chia, Josie Larby, Greg Haug, Ashutosh Hardikar, Gurpreeet Kaur Singhera, Tillie‐Louise Hackett, Iain Robertson, Mathew Suji Eapen, Sukhwinder Singh Sohal

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related molecular mechanisms research
Canadian institutionsSt. Paul's HospitalUniversity of British Columbia
Fundersnot available
KeywordsVimentinEpithelial–mesenchymal transitionLung cancerEpidermal growth factor receptorAdenocarcinomaMedicineCOPDEpitheliumLungPathologyPathologicalCarcinomaCancerImmunohistochemistryInternal medicineOncologyCancer researchMetastasis

Abstract

fetched live from OpenAlex

Introduction: Our previous studies have shown active EMT in smokers and COPD patients, which is central to lung cancer development in these patients. Aim: We aim to evaluate EMT changes in extensive patient groups who were diagnosed with NSCLC (adenocarcinoma and squamous cell carcinoma) compared to normal controls (NC). Method: Resected lung tissue from NSCLC patients (n=35), sub-grouped as COPD current and ex-smokers, patients with small airway (SA) disease and normal lung function smokers compared to NC (n=11), were immuno-stained for EMT biomarkers: E-cadherin, N-cadherin, S100A4, Vimentin, and epidermal growth factor receptor (EGFR). Biomarkers were analysed in the SA epithelium and sub-epithelial layers. Tissue analysis was done with microscope-assisted Image-ProPlus 7.0 software. Results: Compared to NC, in all pathological groups, SA wall thickness was significantly increased (p<0.05); SA epithelial E-cadherin expression markedly decreased (p<0.01), whereas N-cadherin, Vimentin, S100A4, and EGFR expression were notably increased (p<0.01). Vimentin expression in sub-epithelium showed a similar trend to epithelium across all pathological groups (p<0.05). However, such changes were only seen in Rbm for S100A4 (p<0.05). EGFR and N-cadherin expressions in both cancer phenotypes were markedly higher than Vimentin and S100A4 (p<0.0001). EMT markers expression positively correlated to smoking history. Conclusion: EMT is a crucial and active process in NSCLC patients with COPD, resulting in SA remodelling and cancer development. This is the first study to show such changes in broadly phenotyped individuals, suggesting EMT as a key mechanism and novel therapeutic target.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.246
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2023
Admission routes1
Has abstractyes

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