The presence of <i>Ixodes pavlovskyi</i> and <i>I. pavlovskyi</i> –borne microorganisms in Rishiri Island: an ecological survey
Bibliographic record
Abstract
ABSTRACT Rishiri Island, towering toward the Sea of Japan, has been volcanically dormant for approximately 8,000 years. This small inhabited island is free of middle- to large-sized wildlife and a crucial stopover for wild birds migrating along various routes of the East Asian Flyway. A 5-year survey was conducted to explore the biogeography of ticks and tick-borne microorganisms. By flagging vegetation, Ixodes pavlovskyi (Pomerantzev, 1948), distributed in limited spots in the Far East, was predominantly collected (60%–80% collection) throughout the survey period. The I. pavlovskyi consisted of two haplogroups, Asahikawa-type and Rishiri-type, with the prevalence and nucleotide diversity of Rishiri-type being over 90% and 0.068, respectively. A survey of wild animals revealed that red-backed voles and wild birds, including Oriental greenfinches and black-faced buntings, are their hosts for blood feeding. Furthermore, the red-backed voles were infected with tick-borne Candidatus Ehrlichia khabarensis (5/21, 24%). Till date, microorganisms with identical gene sequences have only been reported from Khabarovsk and Vancouver. Ca . E. khabarensis gene has also been detected in host-seeking adult I. pavlovskyi . These results indicated that Rishiri Island is a refuge for both I. pavlovskyi and I. pavlovskyi –borne microorganisms. Additionally, the Babesia microti US lineage, which is vectored by Ixodes persulcatus in the Far East, appears to be maintained between I. pavlovskyi and wild rodents. Various factors have influenced the unique ecosystem of the island. The historical and ecological biogeography of Rishiri Island helps us understand the origin, evolution, and expansion of ticks and associated microorganisms. IMPORTANCE Understanding the ecology of ticks and tick-borne microorganisms is important to assess the risk of emerging tick-borne diseases. Despite the fact that the Ixodes pavlovskyi tick bites humans, we lack information including population genetics and the reason for the inadequate distribution in Japan. A 5-year survey revealed that Rishiri Island, the main stopover in the East Asian Flyway of wild birds in the northern Sea of Japan, was a refuge of I. pavlovskyi . The I. pavlovskyi included two haplogroups, which were supposed to diverge a long time before the island separated from the continent and Hokkaido mainland. The detection of microorganisms from wildlife revealed that wild birds and rodents play a role in diffusion and settlement, respectively, of not only I. pavlovskyi but also I. pavlovskyi –borne microorganisms including Candidatus Ehrlichia khabarensis and Babesia microti US lineage. Various island-specific factors control I. pavlovskyi dominance and tick-borne pathogen maintenance. The results may enable us to explain how tick-borne infectious microorganisms are transported.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.001 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".