MétaCan
Menu
Back to cohort
Record W4388598310 · doi:10.1016/j.rpth.2023.100495

OC 66.1 Comparative Analysis of Coagulopathy in Baboon Models of Toxigenic Versus Non-Toxigenic Bacillus Anthracis Sepsis

2023· article· en· W4388598310 on OpenAlexaff
Ravi S. Keshari, Girija Regmi, N. Popescu, Cristina Lupu, Susan Kovats, Darise Farris, Owen J. T. McCarty, Mark V. Coggeshall, Florea Lupu

Bibliographic record

VenueResearch and Practice in Thrombosis and Haemostasis · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacillus and Francisella bacterial research
Canadian institutionsVancouver General HospitalUniversity of British Columbia
Fundersnot available
KeywordsBaboonBacillus anthracisCoagulopathySepsisMicrobiologyMedicineBiologyImmunologyInternal medicineBacteria

Abstract

fetched live from OpenAlex

with heavy chains expressing conserved HCDR3 amino acid motifs, indicating shared pathways of anti-PF4 production (PMID:35661872).Given the likely role of these antibodies in mediating VITT, we sought to generate recombinant antibodies (recAbs) from these serum anti-PF4 clonotypes utilising a reverse engineering approach and study their immunological and functional properties.Aims: Engineer and characterize anti-PF4 recAbs derived from serum Ab sequences and investigate their effects on platelet and endothelial cell (EC) function.Methods: Ig heavy-and light-chain genes were constructed from anti-PF4 Ig variable (IgV) and constant (IgC) region amino acid sequences and expressed as full length clonotypic IgGs in CHO cells.Immunoreactivity was confirmed by Biolayer interferometry (BLI) and ELISA.The effect of anti-PF4 recAbs on platelet activation was studied by PF4-induced platelet activation assay (PIPAA).Human lung microvascular EC stimulation was assessed by Pselectin, ICAM-1, and VE-cadherin expression following 24-hour incubation with anti-PF4 recAbs and VITT sera.Results: Five BLI-and ELISA-immunoreactive anti-PF4 recAbs were reverse engineered from two VITT patient sera and their translated IgV and IgC amino acid sequences authenticated by MS.Epitope specificity as assessed by human PF4 alanine mutants revealed R22 as a key PF4-binding residue, consistent with an earlier study (PMID:34233346).All anti-PF4 recAbs elicited a positive reaction in PIPAA.Furthermore, there was an upregulation of P-selectin on ECs by recAbs and 5%(v/v) VITT sera. Conclusion(s):We report the first successful "reverse engineering" of platelet-activating, stereotypic anti-PF4 recAbs whose sequences are based on authentic serum clonotypes.The anti-PF4-induced up-regulation of EC P-selectin may contribute to thrombotic events and requires further study.These authentic human anti-PF4 recAbs will be important research tools for unravelling VITT pathogenesis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.018

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.252
GPT teacher head0.470
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

Explore more

Same venueResearch and Practice in Thrombosis and HaemostasisSame topicBacillus and Francisella bacterial researchFrench-language works237,207