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ER‐plasma membrane contact sites regulate sterol import in yeast

2016· article· en· W4389007934 on OpenAlexaff
Anant K. Menon, Yves Y. Sere, Jesper Johansen, Evan Quon, Neha Chauhan, Christopher Beh

Bibliographic record

VenueThe FASEB Journal · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicFungal and yeast genetics research
Canadian institutionsSimon Fraser University
Fundersnot available
KeywordsSterolErgosterolYeastChemistryMembraneLipid dropletCell biologySaccharomyces cerevisiaePhosphatidylinositolBiophysicsBiochemistryBiologyCholesterolSignal transduction

Abstract

fetched live from OpenAlex

Sterols must be distributed from their site of synthesis or point of import to other cellular membranes. The high, bidirectional flux of sterol between the ER and plasma membrane (PM), ~100,000 molecules/second, occurs by non‐vesicular mechanisms involving sterol transport proteins (STPs) that may localize to ER‐PM contact sites. In wild‐type yeast cells ~48% of the PM is closely associated with ER. To test whether this association plays a role in sterol transport, we created a yeast strain, Δ‐s‐tether (based on Δtether (Manford et al. (2012) Dev Cell 23:1129)), where ER‐PM contacts were largely absent. Electron microscopy of thin sections indicated that more than a third of the Δ‐s‐tether cells examined had no detectable contacts, and that on average only 1.7% of the PM was contacted by ER. We found that whereas Δ‐s‐tether cells display high levels of PM phosphatidylinositol‐4‐phosphate and choline‐dependent growth, consistent with lack of ER‐PM contacts, the rate at which newly synthesized ergosterol exchanges with the PM was surprisingly unaffected. However, transport of exogenously supplied sterol to the ER was slowed dramatically, an effect that could be reversed by growing the cells in choline or by over‐expressing an artificial ER‐PM tethering molecule. Our results suggest that ER‐PM contact sites control a critical step in sterol import.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.258
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes1
Has abstractyes

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